Epul023734.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- -
- Assembly
- GCA_963931895.1
- Location
- OZ007549.1:2989344-3006674[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.26 19 6.6 3.8 1 23 342 364 342 364 0.96 2 11 4.1 2.9e+02 2.8 0.4 1 19 368 386 368 388 0.82 3 11 6.2e-05 0.0044 18.0 0.7 1 20 397 416 397 418 0.94 4 11 0.0084 0.6 11.3 1.3 2 21 426 445 426 446 0.92 5 11 2.6e-05 0.0019 19.2 0.3 2 23 462 483 461 483 0.94 6 11 0.00029 0.021 15.9 0.2 1 23 488 510 488 510 0.98 7 11 0.00062 0.044 14.8 5.6 1 21 519 539 519 544 0.94 8 11 0.0013 0.095 13.8 1.8 1 23 552 575 552 575 0.89 9 11 0.016 1.1 10.4 0.2 1 23 581 604 581 604 0.87 10 11 0.0087 0.62 11.2 0.4 3 19 617 633 615 634 0.92 11 11 0.034 2.4 9.4 1.0 1 23 647 670 647 670 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAATCAACATAAATATCGAGGGTTACAATGTAAATGGTGTGTGTGTCGGATGTTTGAATTATAATCGTAAAATGTATTACGACGATGAAGTAAAAGAATGTTTCAAAACAATCGGAAATATTGATGTCCCAGATGGTCTGACTATCCAGGTGTGCTGGGAGTGCCTAGCAGCAGTTAGAAGAGTCACTCGCTTCCAAACTCAAATACTGACCACCTATGATGTACTAATTGACTATTCTAGACAGCACACATTCCTGAACTCCCCCAAAGATCTGACCATCTACGCGACCACTCGCCTGAGCACAGCGCCGGTGTCGCGGACAGAACTGGTGCAAGCGGAGGATGCGTTGGACGTGGAGGTCAAGCAGGAGGCGAAGAATGAGCCCGCTGTGGCTGATTGCGAAGAAGGCGGTAAGTGTACTCCCGCTGTGGGTAATTGCGAAGAAGGCGGTAAGTGTACTCCCGCTGTGGGTAATTGCGAAGAAGGCGGTAAGTGTACTCCCGCTGTGGGTAATTGCGAAGAAGGCGGTAAGTGTACTCCCGCTGTGGGTAATTGCGAAGAAGGCGGTAAGTGTACTCCCGCTGTGGGTAATTGCGAAGAAGGCGGTAAGTGTACTCCCGCTGTGGGTAATTGCGAAGAAGGCGGCATAAAAGAAGAAGACGCAGATCTGTCAAACTACTGGGAGGTAGCACTGGACCCTGGATCATCAGACGAGGATGTGCAGCTCTCGCAGATCAAGGACAAGAAGCAGAAAGAGAAGagagaaaagaagaaaaagaaacataAGACAAAACCTCCAGAACCAGTGAGCCGGAAACTAAAAAACCTACCAGACATAGTTGAATTGCACACAATGACCGAAGACGAGATGTGGCTAGTTCGCATCCAGGATGTGGGCAGCCAGTGTTTCCAACGGATGAGGCATAAATGTGCGGACTGCATTATCGGGTTCAACACGGAGCGGTTGAAGGAAACGCATGATAGCGGGAAACATAGGCCAAAATCCGGCGGGGCCCACCAATGCGATGTGTGCAAAGCGTACTTTCTGACTAAAGACAATTTGTCTGTGCATCGCTCGCACCATCTAGCGGCGTACAGATGTCGCCTCTGCGGATTGGTAACCACCCTCAAGCGAGGTATATCGCAGCACGCGTGCGCACAAAGCAATGTCAAGGAAGAGTTCCCCTGCACTTACTGTGATAAAGTCTTcagtTCCAAATCGCGACTCTCGTACCACCGCTCTGCGAAGTGCCGCGCGGAGCGTCCGCAGTGCGACTGTTGCGGTAAAGTGTTCGCTAACAAGATGACGCTCAAGTATCATCTCAAATTACTACCGCTGAAGAAGGAAGATAGGCCGAAAGAGAAGCTCTATATCCCTTGCAAAGGATGCAACAAGGTTTTCACATCTAAGAAGAGCTATAGAGCGCATGTTGTGATCCACGAGGGTCATTCGTACCCGTGCCCTATCTGCGGCAAACTGTTCATGTGGAAACGGAACCTGTCGCGACACACGCGCGCCCATAAGGACAGGGACGCGGGGGCTACGCATCAGtGTCGCGAATGCAATAAGACTTTCGCATCCCGAGATTGCTACAATAACCACATGCGGCTAAGTAAACGGCATGCGAGCGAGTCAACTTACGTGCACGAATGCAACTACTGTGGCAAGAAGTTTCCGACGAAATGGTGTATGGTGGACCATGTGGATTGGGAACATCTGAAGCGGATCAAATATCAATGCAGCGTGTGTTTCAAGGCGTTCAAAACAGCGAAGATAATGGTAGCCCACGTGAATAACATCCATGGCGGGAAGAAACGGGAGGCGGACGGTGAACATTTATGTGAAGTCTGTGGAAAGTCTTACAAGTCTGTAAAACGTCTGAAAGCCCACGTGTGGGCGATGCACACCCAACGCTCCTCTGTCAAAAGCTACAAATGTACTATGTGCGCGGCCTCGTTCACATGGCAGACGTCTATATACAAgcatatgaagatgatgcaCAACAATAAACGGACCAACAagGTCACCCGCGCGCCGTCTGTCAAGAAACAGGATCCATACGCCGATCTGCAGAATTTCATACACACGCTACAGCCGATACCGCCTATACATGCCTCACAGAACATTGTCTAA
- Protein Sequence
- MKEININIEGYNVNGVCVGCLNYNRKMYYDDEVKECFKTIGNIDVPDGLTIQVCWECLAAVRRVTRFQTQILTTYDVLIDYSRQHTFLNSPKDLTIYATTRLSTAPVSRTELVQAEDALDVEVKQEAKNEPAVADCEEGGKCTPAVGNCEEGGKCTPAVGNCEEGGKCTPAVGNCEEGGKCTPAVGNCEEGGKCTPAVGNCEEGGKCTPAVGNCEEGGIKEEDADLSNYWEVALDPGSSDEDVQLSQIKDKKQKEKREKKKKKHKTKPPEPVSRKLKNLPDIVELHTMTEDEMWLVRIQDVGSQCFQRMRHKCADCIIGFNTERLKETHDSGKHRPKSGGAHQCDVCKAYFLTKDNLSVHRSHHLAAYRCRLCGLVTTLKRGISQHACAQSNVKEEFPCTYCDKVFSSKSRLSYHRSAKCRAERPQCDCCGKVFANKMTLKYHLKLLPLKKEDRPKEKLYIPCKGCNKVFTSKKSYRAHVVIHEGHSYPCPICGKLFMWKRNLSRHTRAHKDRDAGATHQCRECNKTFASRDCYNNHMRLSKRHASESTYVHECNYCGKKFPTKWCMVDHVDWEHLKRIKYQCSVCFKAFKTAKIMVAHVNNIHGGKKREADGEHLCEVCGKSYKSVKRLKAHVWAMHTQRSSVKSYKCTMCAASFTWQTSIYKHMKMMHNNKRTNKVTRAPSVKKQDPYADLQNFIHTLQPIPPIHASQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00705400;
- 90% Identity
- -
- 80% Identity
- -