Basic Information

Insect: Eupithecia pulchellata
Gene Symbol: PRDM13
Assembly: GCA_963931895.1
Location: OZ007550.1:4504913-4507383[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.21 15 6.9 6.4 1 23 43 66 43 66 0.95

2 16 0.0025 0.18 12.9 0.1 2 23 96 118 95 118 0.96

3 16 0.041 2.9 9.1 5.2 1 23 141 164 141 164 0.97

4 16 0.035 2.5 9.3 0.1 3 23 171 192 169 192 0.92

5 16 1e-05 0.00073 20.4 0.8 1 23 196 219 196 219 0.96

6 16 0.014 1 10.6 1.8 2 23 225 247 224 247 0.94

7 16 2.1 1.5e+02 3.7 1.0 1 11 252 262 252 268 0.89

8 16 0.0016 0.12 13.5 5.2 1 23 341 364 341 364 0.98

9 16 7.2 5.1e+02 2.0 0.1 2 23 393 415 392 415 0.82

10 16 8.1e-05 0.0058 17.6 2.6 1 23 435 458 435 458 0.97

11 16 3.9e-05 0.0028 18.6 0.6 1 23 463 485 463 486 0.95

12 16 0.0043 0.31 12.2 2.8 2 23 492 514 491 514 0.95

13 16 0.041 2.9 9.1 0.6 2 21 520 539 519 542 0.89

14 16 0.0099 0.71 11.0 1.4 1 23 546 569 546 569 0.97

15 16 0.13 9.3 7.5 0.6 2 23 576 597 575 597 0.96

16 16 0.0049 0.35 12.0 1.1 1 23 603 625 603 625 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.21	15	6.9	6.4	1	23	43	66	43	66	0.95
2	16	0.0025	0.18	12.9	0.1	2	23	96	118	95	118	0.96
3	16	0.041	2.9	9.1	5.2	1	23	141	164	141	164	0.97
4	16	0.035	2.5	9.3	0.1	3	23	171	192	169	192	0.92
5	16	1e-05	0.00073	20.4	0.8	1	23	196	219	196	219	0.96
6	16	0.014	1	10.6	1.8	2	23	225	247	224	247	0.94
7	16	2.1	1.5e+02	3.7	1.0	1	11	252	262	252	268	0.89
8	16	0.0016	0.12	13.5	5.2	1	23	341	364	341	364	0.98
9	16	7.2	5.1e+02	2.0	0.1	2	23	393	415	392	415	0.82
10	16	8.1e-05	0.0058	17.6	2.6	1	23	435	458	435	458	0.97
11	16	3.9e-05	0.0028	18.6	0.6	1	23	463	485	463	486	0.95
12	16	0.0043	0.31	12.2	2.8	2	23	492	514	491	514	0.95
13	16	0.041	2.9	9.1	0.6	2	21	520	539	519	542	0.89
14	16	0.0099	0.71	11.0	1.4	1	23	546	569	546	569	0.97
15	16	0.13	9.3	7.5	0.6	2	23	576	597	575	597	0.96
16	16	0.0049	0.35	12.0	1.1	1	23	603	625	603	625	0.95

Sequence Information

Coding Sequence: ATGCCTGTGATGGAGATTGAAGATCTAAAAAAGGCCGATAAACTCTCAGGAGACAAAATTAGACAGAACATAGCGTGCATACTCAATAACACCACCGCTGTCCCCTTCTGGTATAGAAACCACGTTTTTAACTGTTTGTTTTGCGAAAAAACATACCCCCAATGCTATTTGCTACATAATCATTATCAAAACAAACACTCAACTGTCGAGTTGGACGAAAGCCATCCAATACTAAAGACATTTAGACAGAACAACACTTTCTTGAGGCTCAACATTGTCAACCTGACCTGCAAAATCTGTTTCCAATCTTTCGAGACTCTAGACGGTGTAATAGCTCATCTGAAGTCAGATCACGATCTTGAATTCGACACGAAAGTGACTAATAACCTTATAGAGACCTTCAAGCTTACTAACAACTCCCACACTTGCCATATCTGCAAGGAAGAATTTAGCTATTTCAAAATCCTAATTATGCATATGCGAAAGAAACACGCGATAGGCGATATAATTTGCAACATATGCGATAGGCGGTTCTTGAGGAAACCAGAGTACCTGGCCCATAAAATTTCCGAACACGGCCCGGGGTATAGTTGCGCAGATTGCGGCAGGGAGTATAGCAGCAAAACTCAACTCAAAACACATATATATAAAGATCACAATGCGTTCAAATTGAAATGCTTTGAATGCCACGAAGAGTTTCAGTCTCCGTATAAGAGAAGGAAGCATATGATACTAGCGCACACCGCCGCGTCATACTCTTGTAGTCTATGCGAGAAGATATTCACGTGTATAACACTCGAAAAGGAACATCTTGTGAAAAAGAAAATCGACGCGGGAAGTGTTTTAGGTCTTGAACGATATATTGATGATGACAGTCTCGTAAATTCAGCCACAAATAGTAAAAGATATCCTGTTAGTCAGAGGATAGACAAAAAGCAAAAAGTAAAAGATCTCAGGATGGAAATAGCTAGTTTTATCAATTTGGCCAATGCAATACCTTTCAAATTCTTCCGGAATAAGTTTAGATGCTTCTATTGCGGTCAGGAATTTGACTTGTGTGATCATCTTAAAGAGCACACGAGGAAAATCCACCCAATATGCGAAGCTACCTTCCGTGCTATGAAATTGAAAGACAGATCCGCTGGCGTCAGAATCAAAATAGACACGTCGTCCTTGAGCTGCAAAATGTGCTTGCAACCATTCCCAGATTTTGATTCCGCTGTAGGCCATTTAGAACAAGAACATAATGCCAACGTGAAAAACTTAGAACTCCTCCAACCTTTTAAACTTGTTCACGACGAATTCTCTTGCCCGAATTGTCATTTAAAGTTTAGATCATTCAGTACTCTGGTGAAGCATTTGAATTCGGCTCATACTGATGATAAATTCATGTGTTCCGACTGTGGCAAAGCTTCCGCTAGCTACATTAACCTCAAAAACCATATCGCCAGGCATCACTCTATTGCTACAATCAAATGCCCCCACTGCAAGCTGGTTTTCCTCAGCCGTCACGAGTTGCAAACGCATATGGGCAAAATGCACGGCAGTAAGGTCATAAAGTGCCAGAAATGTGTAGAGAAATTTGAAACGCAGTACCAAAAGATGAGGCATTTGGTTGATGTTCACAATGGCGGTCATAAATGTCCGTATTGCGCTGCAGTTTTCATTAAATACTCCTTCATGTCTAATCATGTAAGGAGGTTGCATCTCAAAGAGAAAAACGTCCAATGTTCTGTCTGTAGTTTGAAGTTCTTTGATGGGAATCGGCTGAAATTGCATATGGTGAAGCATGTGGGTGGTAGAGAGTTTAGGTGCGATTATTGTGGTAGAACGTTTCTTTGGAGAAAGAATCTTGTTACCCATATGACTTTACATCGGAAGAATGATGTCGTTTTGTTACGTTGA
Protein Sequence: MPVMEIEDLKKADKLSGDKIRQNIACILNNTTAVPFWYRNHVFNCLFCEKTYPQCYLLHNHYQNKHSTVELDESHPILKTFRQNNTFLRLNIVNLTCKICFQSFETLDGVIAHLKSDHDLEFDTKVTNNLIETFKLTNNSHTCHICKEEFSYFKILIMHMRKKHAIGDIICNICDRRFLRKPEYLAHKISEHGPGYSCADCGREYSSKTQLKTHIYKDHNAFKLKCFECHEEFQSPYKRRKHMILAHTAASYSCSLCEKIFTCITLEKEHLVKKKIDAGSVLGLERYIDDDSLVNSATNSKRYPVSQRIDKKQKVKDLRMEIASFINLANAIPFKFFRNKFRCFYCGQEFDLCDHLKEHTRKIHPICEATFRAMKLKDRSAGVRIKIDTSSLSCKMCLQPFPDFDSAVGHLEQEHNANVKNLELLQPFKLVHDEFSCPNCHLKFRSFSTLVKHLNSAHTDDKFMCSDCGKASASYINLKNHIARHHSIATIKCPHCKLVFLSRHELQTHMGKMHGSKVIKCQKCVEKFETQYQKMRHLVDVHNGGHKCPYCAAVFIKYSFMSNHVRRLHLKEKNVQCSVCSLKFFDGNRLKLHMVKHVGGREFRCDYCGRTFLWRKNLVTHMTLHRKNDVVLLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -