Epul024357.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- -
- Assembly
- GCA_963931895.1
- Location
- OZ007550.1:4515818-4524875[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.19 14 7.0 0.1 3 23 156 177 154 177 0.94 2 23 0.0013 0.093 13.8 1.1 1 23 182 205 182 205 0.91 3 23 0.24 17 6.7 4.8 1 23 208 231 208 231 0.94 4 23 0.0062 0.44 11.7 2.2 1 23 237 260 237 260 0.94 5 23 0.068 4.8 8.4 0.3 2 21 268 287 267 288 0.92 6 23 0.075 5.3 8.3 0.7 1 23 360 382 360 382 0.98 7 23 1.8 1.3e+02 3.9 0.0 2 22 408 428 407 430 0.89 8 23 0.65 46 5.3 0.1 3 23 454 475 452 475 0.93 9 23 0.002 0.14 13.2 0.1 3 23 483 504 482 504 0.95 10 23 0.0018 0.12 13.4 0.6 3 23 511 532 510 532 0.95 11 23 0.012 0.88 10.7 2.3 1 23 538 561 538 561 0.98 12 23 0.0013 0.093 13.8 2.2 2 23 568 590 567 590 0.95 13 23 0.028 2 9.6 1.3 1 23 596 618 596 618 0.94 14 23 0.018 1.3 10.2 1.2 1 23 624 647 624 647 0.89 15 23 0.0091 0.65 11.2 0.5 2 23 897 919 896 919 0.93 16 23 2.9 2e+02 3.3 1.7 2 23 942 964 941 964 0.91 17 23 0.00099 0.071 14.2 0.1 1 23 971 994 971 994 0.94 18 23 0.0046 0.32 12.1 2.3 2 23 1000 1022 1000 1022 0.97 19 23 0.0046 0.33 12.1 0.1 2 23 1028 1050 1027 1050 0.95 20 23 0.0025 0.18 12.9 0.9 1 23 1057 1080 1057 1080 0.96 21 23 0.024 1.7 9.8 0.9 1 23 1086 1108 1086 1108 0.94 22 23 8.4e-05 0.006 17.6 1.8 1 23 1114 1136 1114 1136 0.98 23 23 3.4e-05 0.0024 18.8 2.5 1 23 1142 1164 1142 1165 0.96
Sequence Information
- Coding Sequence
- ATGTCATTACTTAACCTATTAAGATTTTTAAGCAGAACTGCTTTTGTTATGATGGTGTTCGGTAGCAAGCCACCGGGCAGTTATCTGGTACGACTTGGTATACTCAGACGCAACATTTCCACCGTCCTCCGCTACTCAAACGTTACGCCTTTCAGTTGGAACACGAAAGGCTTCCGTTGCTTCTACTGCTCAAAACATTTGCTAGAATCCAATATCAAAGGACACACAGACAAACATAGCGCTGTCGACTTGGATAGTTTCCTCAAAAAGAATGTTATAACTAAAGATATGCCTGTCAAAATTGATATAACAAATCTAGCTTGCAAGTTCTGTCCTGGATCATCCATCGCTACTTTAGATGAATTGATATCCCATATAGTTGAAAACCACAAAGAATCTTATGATACGGATACTGAACTATGCTTCTTTCCTTTTATTCTCAAGAAAGATAACGATATAATGAATTGCGTGTTATGTGAGGTGGCATTTGACAACTTTCCGTCCCTTATAACGCATATGTACAAGCAGCATGTCACACACTCGTTTATATGCCAAGTATGTGGCCACAGCTTCAAAGATCTAGTTCGCTTGAACAGGCATACCACTGCTAGTCATATCGGTCACCGCTGCACGGTCTGCGATAAAATCTTCGACGCATACCACAAGTTAGATAAACATAAGGAGAAATTCCACGGGCATGTCAAAACTTACCACTGTAATCTCTGCACTGATAGCTTCAAAAGCAACTATCAACTCAGAGTTCATCTAGGGAAGGTCCACAATGTTCAGAAGTATAAGATAAAATGCGAGCAATGTGATAAGATTTGTAATACCAAAGGAGCTATGGTCTTGCATGTCCAAAGAGAACCTAGAGGTGGTCAGAAGGCAAAGCCATTGATAAAACCGACGCCAGCACCGCCCAAACGACCCGTCAAAAGCCTTGCGCCATCCGCAAACGTACTAGCAACGAAACCCAAAGGTTTATCCAGTAAGGACAAACGGAATATAATGATACAAAACGTACTAGCGATACTTCAGAAGACCACAGCTATGCCATTCCGTTGGTTAAAGAGTTCCTACCGTTGCTTCTATTGCTACGACATCTTTCAAGAGGCGTCGGACTTAAAAGAACACCAAGTTACGCACAGTGATGATTCTATCAAAGAAAAGGCAATGAACAACTACTGGGAACCCGTAGTATACATCGATATATCAAACATGAAATGTCTTCTATGCCCCGAAGAAGTAACAGATCTATACGATATGATCAACCATTTAGTAGCTAAACACAGCGTGGTTTACAACAAAGATGTAGGGACTTGTATGGTCGCTTTCAAGTTGAACAATTTCGACGTTAGCTGCCTCGCTTGCGGCGCTAGCTTCTACTCCTTCGGTCCATTGTTGAACCACACGAACAAAGACCATAAAGGAGCATCGGTCATCCTCTGCGATATATGCGGACAGAACTATAAAGACCAGAATCTTCTGCGACTCCACGTAAAAGCAGCGCATGACAATAGTGGCATGCTCTGCCCAGAATGCGGGGATAAATTCGAGACTCGATCCAAATTGAAAACACACCAGATCAATAGCCACGGTGTTGAGCGTAAATTCAAATGCTTGGTCTGTGATCTGACTTTTGGCAGCCATTACAAAAGATCGCGGCATATGGCGACCGACCACAAAAACCGACAGGAGATCAAATGTCTTCACTGTCCGAAGACCTTCGTCTTTCGCAGCATGATGATGACACATTTAAGAGATACTCATTTGAAAGTGCGTAACCATATCTGCGGGATTTGTGGATGGAAAGCTTTTAATAGCAATCGATTGAAGAATCACATGTACAAACATAGCGGGGAGAAGAATTTTAAGTGTGATTCTTGCGATAAAGCGTTTACGACGCGAAAGATTATGAAAGCTCATTTTGCGAGGATGCATAAGCCTCCAGAGACAGCTGGTGCTGTTCCGATCATGACACATTACGACGACGCATTGAAGAACGAACAACAACTCGCCGCTTTACTAATCACCATCATACAGAACTCCACTATAATCCCGTTCCGTTGGTACCACGGAAAGTTCATGTGCTTTTACTGTCCCACAAAGTTGTACACTACGCAAGGCCTGAGAGAGCATCACCTATGTGGACATAGCGAGATTAATATCACAGAAATCATAACCAAATTCGTTTATAACGATAGGAGAATAAAATTGGACACTGGATTCGCGAAATGCAGTCAATGCGATGTAGAAATCTACGATATAACAGACTTTATCGAGCATTTATCGGATGTCCATAACGTCAGATACGATTCGGATATCGCAAGGCATTTCATATCGTTCCGATTATCGGATGATGAAATGAGTTGTCTGGAATGCGATGAAAAGTTTAGATATTTCGAAGCCGATGACGCCACCTACGTCAGTGCAGTCATGGAAAAGATGTCCGAACTGCAAAGAAAAGAAGATCTCGTGACCCTCATGTCATCGATCATAGAAAACTCAACCGCAGTACCATTTCGATGGCACTGCAGCAAATTCGCCTGCTTCTTCTGCTGCTTCCCATTCGAAGAGAGTTCGAAACTCAAGTCACACTACTACGAAGAGCACAGCGACGCGAAAATACGAAGCACTTTCCGATCCGTCATCAAAAACAGCAAAGTCAAACTCGAAATTTCGAACCTAACGTGCAAGAAGTGCTCTAAACCATTCACTGTTCTAAACGATTTCATGGATCATCTAGTCAAAATACATTCTCTGAAGCTGAATCTAGAGATGAAGCATCAGATTTTCGCGTACAAACTCTCCGATGAAAGCATGCAGTGTTTGCAATGCGGCGACGAATTCAGATTCTTCGGTACTTTATTAAAACACACGCACGCGAAACATAACACGACGAACGAGGCGTTCCTGTGCGAAATATGCGGACAGGCGTTCGTAACTAAGACGAGCGTAGCGAGCCACGTTAAATCTGTCCATTCCCAAGACAACGCGACCTGCGATAAATGCAACCTCGCTTTCAAAAACGTAAACGCGTTACAGCTACACCACAGACGCACGCATCGAACGTATATGCTGAAATGCCCGAAATGCCCAGAAGTTCTAACCAGTCCATATCTAAGAAAGCGACATCTAGCGAAAGTGCACGATGTGAAACGTTTCCAATACGAATGCGATATGTGCAATTTCGTCTTCACACTCAAAAGCAGGCTGATTTCACACAAATCTAGGGTCCATATGAAAGAACGGAGCTACAGTTGTGAATTCTGCGCATACAAAGCCTTTAATAAGGAAAGCTTGACCCGCCATATGGTTTCCCACGACGATTCCCGACCGTTTCCTTGTGAGTTTTGTAAGAAAGCGTTTCAGAGGAAGAAAACTTTAGAGTTACATAGACGGATTCATACGAACGATAGGCGGTATGTCTGTAGGGAGTGTAATAAAGCATTTGTCCAATACACAAGTCTGAAACTCCATTATAGAGTGCATCATTCGAAAGAGCCGTCTGGTTTGGAGGGGCAGTGGCTGCCGCGGCATTGA
- Protein Sequence
- MSLLNLLRFLSRTAFVMMVFGSKPPGSYLVRLGILRRNISTVLRYSNVTPFSWNTKGFRCFYCSKHLLESNIKGHTDKHSAVDLDSFLKKNVITKDMPVKIDITNLACKFCPGSSIATLDELISHIVENHKESYDTDTELCFFPFILKKDNDIMNCVLCEVAFDNFPSLITHMYKQHVTHSFICQVCGHSFKDLVRLNRHTTASHIGHRCTVCDKIFDAYHKLDKHKEKFHGHVKTYHCNLCTDSFKSNYQLRVHLGKVHNVQKYKIKCEQCDKICNTKGAMVLHVQREPRGGQKAKPLIKPTPAPPKRPVKSLAPSANVLATKPKGLSSKDKRNIMIQNVLAILQKTTAMPFRWLKSSYRCFYCYDIFQEASDLKEHQVTHSDDSIKEKAMNNYWEPVVYIDISNMKCLLCPEEVTDLYDMINHLVAKHSVVYNKDVGTCMVAFKLNNFDVSCLACGASFYSFGPLLNHTNKDHKGASVILCDICGQNYKDQNLLRLHVKAAHDNSGMLCPECGDKFETRSKLKTHQINSHGVERKFKCLVCDLTFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGICGWKAFNSNRLKNHMYKHSGEKNFKCDSCDKAFTTRKIMKAHFARMHKPPETAGAVPIMTHYDDALKNEQQLAALLITIIQNSTIIPFRWYHGKFMCFYCPTKLYTTQGLREHHLCGHSEINITEIITKFVYNDRRIKLDTGFAKCSQCDVEIYDITDFIEHLSDVHNVRYDSDIARHFISFRLSDDEMSCLECDEKFRYFEADDATYVSAVMEKMSELQRKEDLVTLMSSIIENSTAVPFRWHCSKFACFFCCFPFEESSKLKSHYYEEHSDAKIRSTFRSVIKNSKVKLEISNLTCKKCSKPFTVLNDFMDHLVKIHSLKLNLEMKHQIFAYKLSDESMQCLQCGDEFRFFGTLLKHTHAKHNTTNEAFLCEICGQAFVTKTSVASHVKSVHSQDNATCDKCNLAFKNVNALQLHHRRTHRTYMLKCPKCPEVLTSPYLRKRHLAKVHDVKRFQYECDMCNFVFTLKSRLISHKSRVHMKERSYSCEFCAYKAFNKESLTRHMVSHDDSRPFPCEFCKKAFQRKKTLELHRRIHTNDRRYVCRECNKAFVQYTSLKLHYRVHHSKEPSGLEGQWLPRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -