Epul024030.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- -
- Assembly
- GCA_963931895.1
- Location
- OZ007550.1:1330096-1347298[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.45 32 5.8 0.0 3 23 167 187 165 187 0.95 2 13 0.00056 0.04 15.0 1.9 1 23 289 311 289 311 0.99 3 13 9.6e-05 0.0068 17.4 0.5 1 23 317 340 317 340 0.96 4 13 1.1e-06 8e-05 23.5 1.3 2 23 548 569 548 569 0.97 5 13 0.0082 0.58 11.3 3.0 1 23 575 597 575 597 0.97 6 13 0.0097 0.69 11.1 5.7 1 23 660 682 660 682 0.98 7 13 0.00016 0.012 16.7 0.9 1 23 718 740 718 740 0.96 8 13 0.00062 0.044 14.8 0.7 1 23 748 770 748 770 0.92 9 13 0.011 0.79 10.9 2.1 1 23 779 801 779 801 0.99 10 13 0.00012 0.0082 17.1 0.9 3 23 853 873 852 873 0.98 11 13 0.012 0.84 10.8 5.6 1 23 890 912 890 912 0.97 12 13 1.9e-06 0.00014 22.7 0.7 1 23 918 940 918 940 0.98 13 13 0.0046 0.33 12.1 7.2 1 23 946 969 946 969 0.98
Sequence Information
- Coding Sequence
- ATGGACCCAGATCCACTTAGCTATGGGCAGTACAATTCATTCCACCCTTCGTTCCATTCCCACGCTATCTCACATTCACAGCCCAATATTCCAAATACGCAACCCAACCACATAAATACACCTAATATCTTAAAAACACCAGCCACTATAACTAATATAACGGCAAATATATCAAATACACATCTAAATATCCCTCAAACTGAACCCAATATCAACCAGGTACCCCATCTAACACCAATACCTTACCCTTACTACCCCCAACAATTACCATACCACCAACTACCCAACAATGAACCAACCCAACCTATCCAACCAGCCAACCATTATCCTGACATGCCCGAAGAAGTGACCAATGAGATCACAGAACTCGTCCCCGAGGAAGAAGATATTAAACCAGACATATCGAAAATTAAACTTAAGAAACCTAAACGATTGAAAGGTAAAACAAGCAGTTATTGGAATAAGAAGATTACGGATAAGGATTTTAAGTTCTACGGTTGCGCAGTCTGTAATATTGCATTCCAAGATCTAACCGAGCTCGATTCTCATGTAACAATACATACTAACAGAGTAACGAGCTATGATATAAGACTGCAGAATCAGAAAAGGAGGAAACGTCTCAAGAAagagaaaaagaagaaaaagaaagaagcTAAAGTAAAGAATGAGTTTGATTTAGAAATTAAACCCGAAGATGGTTATATTGGTACGGAGAAAGCTGGTGACGTCAAAACTGACGTCTGTCAAAGTGAAAAAGACAGCTGTGATGTTAAAAATGGCAAAAAAGAACTTAAAAGTGCTGAGAATAGAACTGAAAAGGATTTAGCTAAAGAAAACGATGTGACAAGTCAAAAGGATGAGGTGTACAAGTGTTTTGCTTGTAACAAGAAGTTTGCGTTAAGTTATTATCTTAAGATTCATGTACGATCTCACACTgATGAAAAACCCTACATATGTAACTACTGCGGACAGAATTTCATAACGGCCAGCAAACTTGGCCGGCACAATAAGCGCATACATTTGTCTGTGCGACATCAATGTAGAATATGTTATAAGTTCTATCATAGattTGAAGTACTTACCAAACATTTTGACCAAAAGCATGCGGACCAAAAATTGGAAGGAGAACCATACGATTACAACGCCATCTTACCATACCTAACGGAACTAGAGGATCAATTCAAAGTAGAAGATGATAAGAAACCTAAATCGGAGGATGTTTGGGATGCCCCCCTTCAGCCCTCGGAGGCAGAGGTACCGACGGAGGCTGAGCCAAATGATAAGGTGCCTGATATCGATCACCTTAAGGTAGAGGTGCCTAAGCTAGAAAATGAAGAAAAGgattCTAGAAATAAATATGAGATTGAAGAGATAGAAGTGAAATGTGAGGTGGAAGAGGAGAACGAGGATGGTCTGTCTGGGTCGGAGCTGGTGGATGAGATGTATGATCACGCGAGCTCTGATGATGAAGGGAATCCGAAGGGAGTGAAGGTTGAAGCGACGGATGCGGTAAAAGAGGAAAGGCCCTTCTCAGACGACGAAGAAGAATACTTCCCCCCGGGGGGCTGGGCGCGGTCCCCCCCTCGCGCGTCACCCCCCCGTGCTGTTTCCCCCCCTCCCCGTCGTAAAGGGGGCCCGGGTGTTTGCGAGCTGTGCAACCGGACGTTCAGCAGTCGAAGTTATTTGAAGGTCCATTTGAGAACTCATACTGgtgAAAAGCCATTCGCCTGCTATATATGCCACCGCGGTTTCATAACAGCCAACAAAATGCATCGACACGTTCTAACGCACGACGAGACTTGGGTCGgtGAAAACTGCATAAAACAGGATACAACTGATATTAAGGCGGAAGAGGATGAAGATAATAGCgagaaaaaagataaaaaATCAAGCAAAGCAGAAAAGGCGAAACACAAGATTCTCAAGAAGTTGAATCAGAAGATGGATCCGAAACTGAAAGGCAATCGCAGCTGGCAACACCGCTGTGATTACTGTGATAAGAAGTTCCTACACTTCGCGACGCTGCAAGTTCACCAGAAATCTCACGCGGGAGAGGAGCTTATCCTGAAATGTAGATACTGTTTGGCACCGCAGCTCGATCAGGTCTCCAAAGAAACCCATGAACAAACCCACGCTGGACAGAAAAGGCCATACTTATGCACTATTTGTGGAAAGAATTACAAAAACTCTGCGGCCATGAACTACCACCGCCGCAACCATAAGGCGGATTCGGAGAAGCCCTTCATCTGTGATATTTGCTCAAAGAGATTCGACTCGCACGCCAAACTCGCGCGGCATATACCCACGCATTCCACTGAGAAATTCGTTTACCGGTACGAGTGTCCCGTATGCGCTAACATGTTCCACACGCGCTGGCACGTGCAGATGCATCTAAGATCACATCAGAAGGAAGGCTTAATACTAGAAGAAAATCGCAACGCAGTCCTAGCTATGGTTCTCCAGAACGCGCGTAAGATACCTCTCGGGCCCCCGGCTGAGAACCGAGGGGCCCCGGTGGTCCCCCCGATACCAACCGGCGATGAACGATCTAGGATATGCAATATATGTGGGCAGGTATTCCAGCACTTCTACTATTTAGAAGAGCATCTCAAAACACACGGCAACAAAATAGCTGTCACCGATTTAGAAGAAGAGGAAGAGAAAAAATACACATGCCAGGTCTGCTCAAAATCCTTCAAGCTACACTACTACCTAAAACTGCACAGCTTTACCCACACTAAAGAGAAACCCTTCATCTGTCAACAGTGTGGAAAGGGCTTTATAACTAAGGGCAAACTCAAACGTCACTTAGAAACACACCAAGGGTTGAAGAAACACCAATGTCATATATGCTGTAAGTTCTTCACTAGGCCTAGTTATATGCGAATTCATGTGAGAACTATACATGGTACGCAAGATTATAATTTTAGAGATTATGGAATAGGGGTGCCAGTGGGAATAGGGGTGTCAGGCGGACTCGGGGTACCATTGGGACAGATTACTGATAATAGTATGTAG
- Protein Sequence
- MDPDPLSYGQYNSFHPSFHSHAISHSQPNIPNTQPNHINTPNILKTPATITNITANISNTHLNIPQTEPNINQVPHLTPIPYPYYPQQLPYHQLPNNEPTQPIQPANHYPDMPEEVTNEITELVPEEEDIKPDISKIKLKKPKRLKGKTSSYWNKKITDKDFKFYGCAVCNIAFQDLTELDSHVTIHTNRVTSYDIRLQNQKRRKRLKKEKKKKKKEAKVKNEFDLEIKPEDGYIGTEKAGDVKTDVCQSEKDSCDVKNGKKELKSAENRTEKDLAKENDVTSQKDEVYKCFACNKKFALSYYLKIHVRSHTDEKPYICNYCGQNFITASKLGRHNKRIHLSVRHQCRICYKFYHRFEVLTKHFDQKHADQKLEGEPYDYNAILPYLTELEDQFKVEDDKKPKSEDVWDAPLQPSEAEVPTEAEPNDKVPDIDHLKVEVPKLENEEKDSRNKYEIEEIEVKCEVEEENEDGLSGSELVDEMYDHASSDDEGNPKGVKVEATDAVKEERPFSDDEEEYFPPGGWARSPPRASPPRAVSPPPRRKGGPGVCELCNRTFSSRSYLKVHLRTHTGEKPFACYICHRGFITANKMHRHVLTHDETWVGENCIKQDTTDIKAEEDEDNSEKKDKKSSKAEKAKHKILKKLNQKMDPKLKGNRSWQHRCDYCDKKFLHFATLQVHQKSHAGEELILKCRYCLAPQLDQVSKETHEQTHAGQKRPYLCTICGKNYKNSAAMNYHRRNHKADSEKPFICDICSKRFDSHAKLARHIPTHSTEKFVYRYECPVCANMFHTRWHVQMHLRSHQKEGLILEENRNAVLAMVLQNARKIPLGPPAENRGAPVVPPIPTGDERSRICNICGQVFQHFYYLEEHLKTHGNKIAVTDLEEEEEKKYTCQVCSKSFKLHYYLKLHSFTHTKEKPFICQQCGKGFITKGKLKRHLETHQGLKKHQCHICCKFFTRPSYMRIHVRTIHGTQDYNFRDYGIGVPVGIGVSGGLGVPLGQITDNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00699474;
- 90% Identity
- -
- 80% Identity
- -