Epul020643.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- -
- Assembly
- GCA_963931895.1
- Location
- OZ007542.1:6510195-6512733[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.036 2.6 9.3 0.4 5 23 350 368 348 368 0.96 2 12 0.072 5.1 8.3 0.2 3 23 376 396 374 396 0.90 3 12 1.5 1.1e+02 4.2 0.5 2 23 404 425 403 425 0.90 4 12 1.8e-07 1.3e-05 25.9 0.4 2 23 431 452 431 452 0.98 5 12 0.00033 0.024 15.7 2.5 1 23 458 480 458 480 0.98 6 12 0.00011 0.0079 17.2 0.1 2 20 489 507 488 509 0.93 7 12 0.00077 0.055 14.5 0.1 1 23 544 567 544 567 0.96 8 12 0.0056 0.4 11.8 0.0 3 23 576 596 575 596 0.98 9 12 9.7e-05 0.0069 17.4 0.7 1 23 606 628 606 628 0.98 10 12 4.6e-05 0.0033 18.4 4.6 1 23 634 656 634 656 0.98 11 12 0.0032 0.23 12.6 0.3 3 23 664 684 662 684 0.98 12 12 0.00022 0.016 16.2 0.8 1 23 690 713 690 713 0.96
Sequence Information
- Coding Sequence
- ATGGAGACGTGGACAGATCTCTGCCGCTGTTGTCTATCTGCCAATGCGAAATACTCAATTTTGGCTGAAGAACATAACATTACACAGAAGTTTCTTGAAATAACAACTGTACagGTTAAGCAAGATGATGGTTTGCCCCAGAAGCTGTGTGATGACTGCTATACTGTCATGAATTCCGCTTATCACTTCCGGAAGCAGTGCATCAAGATGGATACTGAACTCAAGACACAGCTTAACCAGCTCTTGAACCAATGTAATGATGACTACATCAATGAACTGGAAAATATGGATGAAGCAGAAAGCAAACAGAAGCAAGATGTTGAGTTTGCAAATGATCCTATGAAACAACTTGAAGCAATCATAAAAAAAGAACCAATGGACAAAGATGATGACTATTATTACGTTCTAGTCATAGACAACCCTAAGGATAAGGAAAATGTTGATGATACTAATATAACTGAGACAGTTAAAGTTAAAACTGAAAATATTGATGACTTACTTCATATAACAGATAATGTAGATAAACTGGACAAGAGTCCTAAGACGACTAAAGTAGTTTCACAAGTAGAAGTAACAACGATTGAGAAAAGTACTTCAGAATTTGAACATTCCATGGACTCATTTCTTATTAGTAATAATGCCATCTCAGCGAATGTACCAGCTACTATTCTAGAAAATGAGGAAAGTCAGGAAGATGATGATAGTGCTGCCAATATTGGTAATGATGTCACTGTCTATGAGAGCACCCAGGATGTTGCTCTCGCAGAGGACAATAGCATCATAACTGATGACCAGAACCTGATAAAGATACTAACAAGTCAAGAATTCATCGAAGATGGCTCAGGAACTGTGTTTCTAAAACATGATGGTGTGAACTATATCGCTGATGGACAACTGGTGAATGAAGATGATGATCAAGACGAAGAAGTTATCTATTATGAAGGCGATGGAGAATCACAGTTCCAAATTGTGAAGTATGATGGTTCAGAGTTAGTCATAGAGTATGCTGATGAAAGTAATCAAGTGATCTCTCCGCATTTCCTCTGTGACTGCGGAGAACAATACACAGATTACAATGAATTTGAGAAGCATCAGACAAAACACAATCCCGCTGGGGAACACCTCTGCAACTTGTGTGGCAAAGGATTTGAGTCCGAAGAAATTCTTACCGGCCATATGGTCTTACACAATGTCTCTGGGCTGCTACTTCAGTGCCCATTCTGTGAAGCAGTCATGAAGCGTAGCGCTTTGACACAGCATATCAAGCATGCTCACAACCATATTAAACCCCAATGTGTAATTTGCAACAAAACGTTTGCCAATCCCAACAATTTGAAGCGACACATGATGATCCACACTGGAGTGAAGGAATTTGAATGTGATCTCTGCTTTAAAAGGTTCAGCCAGAAAATAACCATGCAGACTCACAGACTGACTCATCTAAACCCTGTCCAGCCTACACTCACCTGCCCTGGGTGTGAAGTCACCTTTAAAACCAAAGATCTACTCACACAGCATATTGAAAACAGTGAATGCCCGAAATCCAAAGTTTTAGATTCAGATGCGAAGGATGAACTGATGAAAGCTGTCAAAAAGGAGGTCAAGACCAGCCTGGGAAAGCTCTTAGGGTATGCCTGTTCTTTGTGCAAAAGGATGTTCTCCATAGAATCAGCTTTAGAATCCCATATCGAGTCATCTCACATCATTGACCCAGCTGAGCTTCTATGCTCCGAATGCGGCGAAGTTGTAAGTTCCAAGCAAGAGATGGCAGCTCATGTGATGAGCCATGACAAACGCAAAACCATTGTGAAGAGATTTGAATGCTCGACTTGCGGTAAGGGCTGTTCTAGCCAGGCTATGCTGCTGATGCATGAAAGGGTCCACACAAATGAGAGACCATTCTCCTGTCAGCTATGTCCtcttaaatttaaaactaaaacgcACTTACGTACGCATCAATTGACACATACACGCGAGAAGAAGTTTGGTTGTTCGGTTTGCATGAAGTTTTTTGCTCTAAAAGGCAATCTGGTAGTACATCTGCGGACGCACACCGGTGAGAGGCCTTATGTGTGCAGTGACTGTGGAGATGCCTTTATTGATTCGAAGTATTTGAAGAAACACAAGCTAAAGAAACATGGATCTGAGAATGTAGCTTGGAATCAGTTCTTGAAAGTTAAATATGAAGATATGGATGAATCCTAG
- Protein Sequence
- METWTDLCRCCLSANAKYSILAEEHNITQKFLEITTVQVKQDDGLPQKLCDDCYTVMNSAYHFRKQCIKMDTELKTQLNQLLNQCNDDYINELENMDEAESKQKQDVEFANDPMKQLEAIIKKEPMDKDDDYYYVLVIDNPKDKENVDDTNITETVKVKTENIDDLLHITDNVDKLDKSPKTTKVVSQVEVTTIEKSTSEFEHSMDSFLISNNAISANVPATILENEESQEDDDSAANIGNDVTVYESTQDVALAEDNSIITDDQNLIKILTSQEFIEDGSGTVFLKHDGVNYIADGQLVNEDDDQDEEVIYYEGDGESQFQIVKYDGSELVIEYADESNQVISPHFLCDCGEQYTDYNEFEKHQTKHNPAGEHLCNLCGKGFESEEILTGHMVLHNVSGLLLQCPFCEAVMKRSALTQHIKHAHNHIKPQCVICNKTFANPNNLKRHMMIHTGVKEFECDLCFKRFSQKITMQTHRLTHLNPVQPTLTCPGCEVTFKTKDLLTQHIENSECPKSKVLDSDAKDELMKAVKKEVKTSLGKLLGYACSLCKRMFSIESALESHIESSHIIDPAELLCSECGEVVSSKQEMAAHVMSHDKRKTIVKRFECSTCGKGCSSQAMLLMHERVHTNERPFSCQLCPLKFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSDCGDAFIDSKYLKKHKLKKHGSENVAWNQFLKVKYEDMDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698534;
- 90% Identity
- iTF_00698534;
- 80% Identity
- -