Epul023675.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- -
- Assembly
- GCA_963931895.1
- Location
- OZ007549.1:2319054-2328350[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1e-06 0.00022 22.1 5.1 1 23 10 32 10 32 0.99 2 12 3.5e-07 2.5e-05 25.1 4.4 1 23 37 59 37 59 0.98 3 12 4e-07 2.9e-05 24.9 0.1 1 23 65 87 65 87 0.96 4 12 0.00027 0.019 16.0 0.6 1 23 93 115 93 115 0.98 5 12 3.9e-06 0.00028 21.8 1.5 1 23 121 143 121 143 0.97 6 12 0.00016 0.011 16.7 0.3 1 23 149 171 149 171 0.98 7 12 5.9e-06 0.00042 21.2 1.1 1 19 177 195 177 200 0.94 8 12 0.4 28 6.0 7.6 1 23 242 264 242 264 0.98 9 12 0.008 0.57 11.3 3.0 1 23 270 292 270 292 0.98 10 12 8.2 5.9e+02 1.9 0.1 9 21 301 313 294 314 0.83 11 12 0.028 2 9.6 0.1 2 21 326 345 325 346 0.92 12 12 0.063 4.5 8.5 0.9 1 23 380 402 380 402 0.93
Sequence Information
- Coding Sequence
- ATGAGAAAACACAAAGAAGGAAAATCTTACACTTGCGCATCATGCGATAAATCATTTCACCATAAAGCGAATTTGACAAAGCATATGCTTACACATACAGAAAAATCATACATCTGCGACAGATGCagcaaaaaattcaaacagaaAAGTCATTTGAAAGTTCACATGCGAATTCACACTGGCGAAAAGTCATACGCTTGCGAATATTGCGGGAAAATGTTTAACCAAATCGCAAACTTAAACAAACATATGGGTATCCACACTGGTGTCAAACCATTCTCCTGTGAGGTGTGTGCCAAAACCTTTTTGCAGAGAGCTCAACTCAAAGCGCATTCGAGAACTCACACCGGCTACAAGCCATATGCCTGTGATAAGTGCAATATGGCGTTTAGCCATGCAAACACGTTGCGAAAACACATTCGTCTCCATAACGAGGTGAAACCATACCCTTGTAGTAAATGCTTTGTGTCTTTCTCTGAAGAGTTCAGCTTAGTTGAACATATGCGAATTCATACAGTGGAGAGACCATTTGTCTGCAATAAATGTACGAAGACATTTACTGATGCAAGGAATTTGAAGAGGCATGATATGCAAGTTCATTCTACGGAAAGGCGGCATTCTTGCAATAAATCAGCAGATAAAATGGTGTTCGTATCTGTGGATCCTTCAGCATCAGGCGAGCTGGAGACACCAGAGAAAGCTAAGGATCCACTGCCCAGTAAATACCACTGCAACAAATGCAATTACAAGACATACCACAGATCTGTGTTTCGGGAACATGTGAATAGGCATCAAGGCGTTAAACCCTACAAATGTAAACTCTGCCCTTACTCCAGCGTTTCAAAGAACTACACAAAGAAGCATCAAGACAAACACAAAGTATGCCCCTGTGGATTCGTCAGCCTTAAGAACAGAACAGAGTTCAAGCGGCATTTAAAGAAATGCACGCGGACAGTAGGCCCCAAGCCGAGAATCAGCTGTGGGAAGTGCAAGAAAGAGTTTGTGGATGACCGGGGACTGCTGACGCATATTGCGCGTATGCAAGTATGTAGCTATTGTTCAGTAGAGTGCTGTTCGTTGAAAATGCATATGAATCAAGCACACGCAGAGAAGAAGTTGGAGCAAAAGAACGAAAGATTCGTATGCGGTATTTGCGGATGGTCTTGCAGCCTCAACCAGAAGATACTCCTCCATCTGATACACCATCCTAATCAGACGGTAGACGAGACGGTCATAGACGTTACTGTGCTAAGATTGTGTGGGATATTACCAGCTAAATGA
- Protein Sequence
- MRKHKEGKSYTCASCDKSFHHKANLTKHMLTHTEKSYICDRCSKKFKQKSHLKVHMRIHTGEKSYACEYCGKMFNQIANLNKHMGIHTGVKPFSCEVCAKTFLQRAQLKAHSRTHTGYKPYACDKCNMAFSHANTLRKHIRLHNEVKPYPCSKCFVSFSEEFSLVEHMRIHTVERPFVCNKCTKTFTDARNLKRHDMQVHSTERRHSCNKSADKMVFVSVDPSASGELETPEKAKDPLPSKYHCNKCNYKTYHRSVFREHVNRHQGVKPYKCKLCPYSSVSKNYTKKHQDKHKVCPCGFVSLKNRTEFKRHLKKCTRTVGPKPRISCGKCKKEFVDDRGLLTHIARMQVCSYCSVECCSLKMHMNQAHAEKKLEQKNERFVCGICGWSCSLNQKILLHLIHHPNQTVDETVIDVTVLRLCGILPAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -