Epul024267.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- -
- Assembly
- GCA_963931895.1
- Location
- OZ007550.1:3510858-3514042[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.013 0.89 10.7 0.6 1 23 52 74 52 74 0.95 2 17 0.01 0.74 11.0 0.3 2 23 99 121 98 121 0.95 3 17 0.021 1.5 10.0 0.8 2 23 144 165 143 165 0.97 4 17 0.00041 0.029 15.4 0.1 1 23 169 191 169 191 0.95 5 17 0.00064 0.046 14.8 0.3 1 23 196 219 196 219 0.92 6 17 0.0011 0.077 14.1 2.0 1 23 225 248 225 248 0.96 7 17 0.75 53 5.1 0.3 1 11 254 264 254 267 0.89 8 17 0.039 2.8 9.2 0.1 1 23 321 344 321 344 0.86 9 17 0.12 8.6 7.6 0.2 2 23 367 389 366 389 0.94 10 17 1.1e-05 0.00079 20.3 2.4 1 23 411 433 411 433 0.99 11 17 1.3e-06 9.3e-05 23.3 0.2 2 23 438 459 437 459 0.97 12 17 4.5e-05 0.0032 18.4 0.9 1 23 467 490 467 490 0.96 13 17 0.0013 0.09 13.9 7.4 1 23 496 519 496 519 0.96 14 17 0.3 22 6.4 1.9 1 23 525 548 525 548 0.95 15 17 0.0095 0.68 11.1 2.0 1 20 554 573 554 576 0.95 16 17 3.2e-07 2.3e-05 25.2 1.2 1 23 582 604 582 604 0.98 17 17 0.0073 0.52 11.5 4.8 1 23 610 632 610 633 0.90
Sequence Information
- Coding Sequence
- aTGGAACAGACTGATACAACGATTGCGAGCCACTCGATAGGCGCTCCTCGAATTGTGCTGACGAAGAAAAGGGCATTGATGGAAGATAAGGCAAACGCCGGAGTGCTTTTAAAGTATTCTAATGCGGTCGTGTTTAGATGGCAACGAGGGAAGTTCATGTGTGCGCATTGCCCTGAAAATTACGCCAACTTTACAGATTTACGAATCCACTCTAATGAACATAATAAGTTAGACATAATCGAGACTTACAAAACTCGTCTTATCTTTCCCTTGAACTTGGATATATCAAGTCTTATTTGCAATATATGCAATACATCGATAAAGGATATAAATGATCTAAAAAGTCATCTTTCAAAATACCACAGTATATCTATAGATGGAAACTACGCTGATGGTGTTATACCGTATCGTTTGGTCGGAGAGGGTTTGCGGTGTGTGATCTGCGAATCTAGTTTTGACAAATTTATGACCTTGTTCATTCACATGAATAAACATTATCCGAGCTACGTCTGTGACTTTTGTGGGAAAGCTTTCTCCGCCGCGAATAAGCTGAGATCACATAATGCCATACACAATCCTGGAATGTTTAAATGCAATGAATGCAACGCTGTTTTCACAAATAGGGCGGCTAAGAACAGACATGTTATTGGGAAACACCGTCCTAAAGAACGGTATAAATGCCCGATTTGCGATGAACATTTTAATTCGTACTACACGCGGTTGCAGCACCTCAAACTTGTCCATAGACAAACTTCAGAGTACCGCTGTTCTTATTGCCCTACCATCTTCGACAGTGGTGCTGCTAGTACCGACGACGTCTCACTGACATTTTCTTTTTTAGGAGACCCTGACCGGAGAATTGGTTGGATACCGAAGCGAAAATACTACGACCACAGAGACAATGCAGCCATTATTCTAGAATATTCCAACATTTGTCCATTCAGGTGGCAACGTGGCATGTTTGTCTGCGGGATCTGTCCAAAAAAATTCGCCAAGTTCGACCCTGTTAGAGAACATGTCACATTAGAGCACCCCAACAGAGTTGAGGCTCTAAAgcctataaaaaaatacctccTTAAATGCGATATAACAGATCTTAAATGTCAAATATGTCACGCAAGCATAAAAGACATCAACGATCTTGTTGAGCATTTAAAAGATGATCACGGCAAACAACTTGTCAACGACTGTGGTATGGGTATCATCCCGTATCGTTTAAACACTGCGATGTACAAATGCACGCACTGCCCTGAAACCTTTAACTCCTTCAACTCTTTAAACAGTCACATCAACGTCCACTACCCGAATTCTGTGTGTCCGATCTGCGGAAAGGCTTTCTCAAATACCGGTAAAATGAACTCGCATATGCAAACACACGGCATGGGAACCAAAGGGGTGTTTAAATGCTCCAAATGTGACGAGGTTTTCACTAGCCCATACGAAAAACAAAGACACGCTATGTCTTCTCACTCTAAACCGGAAAGGTACAGATGCCCACATTGCCACGAGGGCTTCAAAAGCTATTCCCATAGGTTGAAGCACATGAACGAATTTCACGACACCAAAATTGATTTCCCTTGTAACCTTTGCTCTGCCGTGTTTGCAATGCATAATATGAGGACGAAGCATATCCAGCATGTTCATATCAAGGAGAAGCGTTACAGTTGCACTGAATGTTCGCTCCAGTTTGTGACGATCTCAATGCTCAGAAGACACAAGATCTGTCACACTGGTGAAAGGAAATACCACTGCGATGTTTGTGATAAATCTTACGCGCGTCCTTACACGCTGAAGGAACACATGCGTATACATACTAACGATCGTAGGTTTGCCTGTATATACTGCAATAGTGTTTTTATACAGAAGTGTAGCCTCAAAAGTCATATGAAGACACATCATCCCAATGAGTTACTGCGTCAAGGCAACGCAACACTCAATCAGGATGATTGA
- Protein Sequence
- MEQTDTTIASHSIGAPRIVLTKKRALMEDKANAGVLLKYSNAVVFRWQRGKFMCAHCPENYANFTDLRIHSNEHNKLDIIETYKTRLIFPLNLDISSLICNICNTSIKDINDLKSHLSKYHSISIDGNYADGVIPYRLVGEGLRCVICESSFDKFMTLFIHMNKHYPSYVCDFCGKAFSAANKLRSHNAIHNPGMFKCNECNAVFTNRAAKNRHVIGKHRPKERYKCPICDEHFNSYYTRLQHLKLVHRQTSEYRCSYCPTIFDSGAASTDDVSLTFSFLGDPDRRIGWIPKRKYYDHRDNAAIILEYSNICPFRWQRGMFVCGICPKKFAKFDPVREHVTLEHPNRVEALKPIKKYLLKCDITDLKCQICHASIKDINDLVEHLKDDHGKQLVNDCGMGIIPYRLNTAMYKCTHCPETFNSFNSLNSHINVHYPNSVCPICGKAFSNTGKMNSHMQTHGMGTKGVFKCSKCDEVFTSPYEKQRHAMSSHSKPERYRCPHCHEGFKSYSHRLKHMNEFHDTKIDFPCNLCSAVFAMHNMRTKHIQHVHIKEKRYSCTECSLQFVTISMLRRHKICHTGERKYHCDVCDKSYARPYTLKEHMRIHTNDRRFACIYCNSVFIQKCSLKSHMKTHHPNELLRQGNATLNQDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706261;
- 90% Identity
- -
- 80% Identity
- -