Epul023872.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- -
- Assembly
- GCA_963931895.1
- Location
- OZ007549.1:5065080-5068386[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0087 0.62 11.2 3.5 1 23 173 195 173 195 0.97 2 15 3.3e-05 0.0023 18.9 0.3 2 23 199 220 198 220 0.96 3 15 3.1e-05 0.0022 18.9 0.7 1 23 226 248 226 248 0.99 4 15 0.00031 0.022 15.8 0.8 1 23 253 275 253 275 0.97 5 15 7e-06 0.0005 21.0 1.3 1 23 281 303 281 303 0.97 6 15 2.5e-05 0.0018 19.2 1.7 1 23 309 331 309 331 0.97 7 15 0.00029 0.021 15.9 0.9 6 23 341 358 339 358 0.96 8 15 0.00066 0.047 14.7 4.5 1 23 361 383 361 383 0.97 9 15 0.018 1.3 10.2 0.4 1 23 389 411 389 411 0.97 10 15 0.022 1.6 9.9 1.5 3 23 486 506 485 506 0.97 11 15 7.2e-07 5.2e-05 24.1 1.4 1 23 512 534 512 534 0.98 12 15 1.4e-05 0.001 20.0 0.5 2 23 541 562 540 562 0.94 13 15 7.9e-06 0.00056 20.8 0.2 1 23 568 591 568 591 0.96 14 15 0.00043 0.031 15.3 3.6 1 23 596 618 596 618 0.98 15 15 0.00074 0.053 14.6 1.4 1 21 624 644 624 645 0.96
Sequence Information
- Coding Sequence
- ATGACTTTTCCCGAAGTATGCCGAGCCTGCCTTGCTACCGGCCTAAAATTGTACAAAATCGAAGATATCACACTTTTGGAATTGTATGAGAAACTCACAAATTCTCAGttgaTCACAGAAGACTCCTGTCCGCACACACTGTGCTACATCTGTGTGCGGCAGCTGCAGCGCTGCTCGTGGTTCTCGGCGACGGCTCAGCGCTCTGAGAAGTATCTGCGGGATCTACTAGCCAATAACATACAGGTTACGCAAGAAACAGTTGCTACACTCAACATAATCTCAACGCTATCCACAAAAACATTAGAATCAGTTTCATATGACAGCTTAACGGACACTGGCACACCCATCGAAACGATCAAAGAGGTTAAAATAGAGTTTTCGGACTCGGAGATATCAAGAGAAGAGATATTCACAAAAGCAGAAAGAGATTCTACAGAACAGATCAATGATATAATAATAGAAGAAGTGAAAATACCTACAGAAGATAATATCAAAGTCAAGAAGGAAACCTCATATTACAAGTGTGATGAGTGCAACCTTAAATTTTTAACGTATAAGAATTTTAATAGACACAAAAAAGCACATAAACAGCTGATCTGCAAGCAATGTGACAAGCGTTTCACTACAGCAACAGCTTTGAGTGGACATATGTCAATTCACACGGGGGAGAAACCCTACACATGCCTTGTATGCAAGAGGGGGTTCCGTCGAAAGCCTTTTTTAGTAGATCATATGAGGATACATACAGAAAAACCATATTACTGCAGCAATTGCAACCTGGGCTTCGAAAAACCAGACACATATAGAAGACATATGGATTTACATGATAAAGATAAACCGTACGCTTGCAGTACTTGTCCAAAGAGGTTCCACTATGCCAGTGCGTTACAAAGACATATGAGTATACATGGAGAGGCGAAACCCTTCGCTTGTAGTCAATGTGATATGACATTCAAAGTGCCATGCGGGTTGAAAAAACATATGTTAACACATACTGATGATAAACCGTATATTTGTTGGTGCAAGAAAGCTTTTCGCTACGCTGTTAGTTTAAGACGGCATATGCTAACTCACACAAAACATAAATGCGATAAATGCAACGTCACATTCGATAAAACAAGCAGCTTAAACAAACACAAAAGAGATCATAAAGAAGGCAGACCTTATTATTGCGAAAAGTGCGACCTAGAATTTAGTATGCTAAGCATTTTTGCTATACATATGTCGAAGCACAGCGAACCAACAGACATACAGGAAAATATAGACATAAAtgaattaaacaaatcaaaaaatgATAGTGAACCAAAAGAACAAAATGAAACCCTACCCAGAACAAAACATAGCGAAATAACAGAACAAAATGAATCCCTACCCAGAAATAAATTAAGCAAATCAACAGAGCAAAATCTAACCCAACTACCCAGATCAAAGAATAGAACGAAAAATCGCCCTTTTTGCCCAGTTTGTAAACGACAACAGCATTCACCATCCGGACTAAAATCGCATATGAGGATCCACACCGGAGAGAAGCCATTTGCATGTACTCAATGTGGACGAGCTTTCCGAACTCCTACATTCCTAAAATACCATATGCGGACCCACACAGGAGAGAAGGTCTGTTCTTGTGAGATCTGCGGAATATCTTTCACTCAGACCGGCGCGTTAAACAAACATATGGTCTTACATACAGGGCAGGTCCCGTACGCTTGTAATTTGTGCGATAAAGCTTATAAACAAAGTGGACAGTTAAGTGCACATATAAAGAATTTGCACCAAGGTGTGAGGTACTTCTGTGATCTGTGCAACGGTCGGTTCACCGCTAAACAACATCTCAAGCGGCATATGAACTCGCACGCCGGTATCAAGCCTTATACCTGCGTGAAGTGTAGTCAGAAATTCTCTACTTTGACGTCTGTGAAGCgacatatgaaaaattcttgtAATTAG
- Protein Sequence
- MTFPEVCRACLATGLKLYKIEDITLLELYEKLTNSQLITEDSCPHTLCYICVRQLQRCSWFSATAQRSEKYLRDLLANNIQVTQETVATLNIISTLSTKTLESVSYDSLTDTGTPIETIKEVKIEFSDSEISREEIFTKAERDSTEQINDIIIEEVKIPTEDNIKVKKETSYYKCDECNLKFLTYKNFNRHKKAHKQLICKQCDKRFTTATALSGHMSIHTGEKPYTCLVCKRGFRRKPFLVDHMRIHTEKPYYCSNCNLGFEKPDTYRRHMDLHDKDKPYACSTCPKRFHYASALQRHMSIHGEAKPFACSQCDMTFKVPCGLKKHMLTHTDDKPYICWCKKAFRYAVSLRRHMLTHTKHKCDKCNVTFDKTSSLNKHKRDHKEGRPYYCEKCDLEFSMLSIFAIHMSKHSEPTDIQENIDINELNKSKNDSEPKEQNETLPRTKHSEITEQNESLPRNKLSKSTEQNLTQLPRSKNRTKNRPFCPVCKRQQHSPSGLKSHMRIHTGEKPFACTQCGRAFRTPTFLKYHMRTHTGEKVCSCEICGISFTQTGALNKHMVLHTGQVPYACNLCDKAYKQSGQLSAHIKNLHQGVRYFCDLCNGRFTAKQHLKRHMNSHAGIKPYTCVKCSQKFSTLTSVKRHMKNSCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -