Basic Information

Insect: Eupithecia pulchellata
Gene Symbol: -
Assembly: GCA_963931895.1
Location: OZ007549.1:4542670-4544539[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7e-07 1.2e-05 26.1 4.2 1 23 181 203 181 203 0.96

2 12 5.9e-07 4.2e-05 24.3 3.6 1 23 209 231 209 231 0.98

3 12 0.00085 0.061 14.4 4.9 1 23 237 259 237 259 0.95

4 12 4.9e-06 0.00035 21.4 1.0 1 23 264 286 264 286 0.97

5 12 0.0091 0.65 11.2 5.0 2 23 291 312 290 312 0.97

6 12 2.5e-05 0.0018 19.2 0.3 1 23 317 339 317 339 0.98

7 12 4e-07 2.9e-05 24.9 1.2 1 23 345 367 345 367 0.99

8 12 5.8e-05 0.0041 18.1 1.4 1 23 373 395 373 395 0.98

9 12 8.5e-08 6.1e-06 27.0 2.3 1 23 401 423 401 423 0.99

10 12 1.3e-06 9.4e-05 23.2 0.8 1 23 429 451 429 451 0.96

11 12 0.00025 0.018 16.1 1.4 3 23 459 479 457 479 0.96

12 12 1.2e-06 8.6e-05 23.4 4.0 3 23 489 509 488 509 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7e-07	1.2e-05	26.1	4.2	1	23	181	203	181	203	0.96
2	12	5.9e-07	4.2e-05	24.3	3.6	1	23	209	231	209	231	0.98
3	12	0.00085	0.061	14.4	4.9	1	23	237	259	237	259	0.95
4	12	4.9e-06	0.00035	21.4	1.0	1	23	264	286	264	286	0.97
5	12	0.0091	0.65	11.2	5.0	2	23	291	312	290	312	0.97
6	12	2.5e-05	0.0018	19.2	0.3	1	23	317	339	317	339	0.98
7	12	4e-07	2.9e-05	24.9	1.2	1	23	345	367	345	367	0.99
8	12	5.8e-05	0.0041	18.1	1.4	1	23	373	395	373	395	0.98
9	12	8.5e-08	6.1e-06	27.0	2.3	1	23	401	423	401	423	0.99
10	12	1.3e-06	9.4e-05	23.2	0.8	1	23	429	451	429	451	0.96
11	12	0.00025	0.018	16.1	1.4	3	23	459	479	457	479	0.96
12	12	1.2e-06	8.6e-05	23.4	4.0	3	23	489	509	488	509	0.97

Sequence Information

Coding Sequence: ATGTCCTCAGTGTGCAGAGTTTGTCTGGCCGTTCATACCAGGATGCACAGGCTCGAAAACAACCAACTTATCGAGATTTATGAGAAGTTAGCTAGTGCTCAGCTTATCACAGATGATGACAGACCCAACACAATATGCTACACATGTTACCCTCATCTAGAAAACTGCAGAAAATTCTCCGACCTTGCTCACAAGTCCGAAAAAATTCTACGAGACCTACTACGAAAAGGATCCAAACTTtcactcaaaaatatatctccccacctaaaaaatataaaaacctttgaactatcaaagaaaaatacacTCTCTTTAGAAATAACACCACAAACTGAAGAAACAGAAACTGAAAGCCTGAAACCTTCCAGTCAGAGTGACTACATTTGCATGTATGAAGCGCAACCTGTCAAAGTGAAGATAGAACGATTAACCATTGACACCCCTGATTTATCTGTAAAGCAAGAGTCCTCTGATGAAGGAGATAATATCGCAGATGCTTTGACATTATCACCAAAGCATGAAAGCTCTGAAGACAAGATTCATGCTTGCGACATGTGTGACAAAACTTTTACATTCAACTCGAATTTACAAAGACACCGTCGGACCCACAGCGATACCAAAGCTTTCCCTTGTGATGTGTGTCACAAATCTTTTAATTACAAATATGATTTAAGAAGACATCAAAAAATACATACAGGAGAAAGGCCTCATGCCTGCAACAAATGTAGCAAAAGATTTCGATTAAAAGGCCATCTAAGAGTACATAAGCTTATACATGGAGATAACGAATATCCCTGCAAATACTGTGACAAAACTTTCAGCCAACTGGCTTTCTTGCAATCACACAAAGAGGTTCATAAAGATGAGAAAACATGCAAAGTTTGTAACAAAACATTTCAACAACGAAAGCTTCTACTCTGTCACATGAAAATCCACGCTGCAAACACGTATTCCTGCGACCAATGTGACAAATCCTTTCCTATTAAAGTCAGACTTATTAGGCACATGAGTATACACACAGAAGAAAAGAAATTTACTTGCGACAGATGTGCAAAAGCATTTACGACTAGCGGGAGCCTCCGACAACACATGCGAACCCACAGCGGCTTGCGACCGTATTCCTGCGACCAATGTGAAAAGACCTTCCTGAGAAAGTTCGAGTTGAAAATCCACTTAAGGGTGCACACCGGGGAAAAACCATTCAAATGCAACATCTGTGAAAAAAGCTTCAGTCAGAGCAGTTCTTTAAAAGTCCATAAGCAAACACATTCTGGTGAACGACCCTTTACTTGTGAAATTTGTGGAAAGACGTTTGGGGATAAGTATACGATGAGGAAGCATATGGTTCTGCATGGTGGGGCGAGACCTACAGCCTGTGACCTTTGTGGAAAGATATGCAACTCAAGAAGCAGTCTGTACTATCATATGAAGGCTCATAGAGAGGGCCCAGAAGACAAACCGGCTTGCGATAGATGTTATAAAACGTTTAGTAATAAAAGTCATCTTACAAGGCATATGAAAATTCATTTGCGTGGGTCATTGCAGTGA
Protein Sequence: MSSVCRVCLAVHTRMHRLENNQLIEIYEKLASAQLITDDDRPNTICYTCYPHLENCRKFSDLAHKSEKILRDLLRKGSKLSLKNISPHLKNIKTFELSKKNTLSLEITPQTEETETESLKPSSQSDYICMYEAQPVKVKIERLTIDTPDLSVKQESSDEGDNIADALTLSPKHESSEDKIHACDMCDKTFTFNSNLQRHRRTHSDTKAFPCDVCHKSFNYKYDLRRHQKIHTGERPHACNKCSKRFRLKGHLRVHKLIHGDNEYPCKYCDKTFSQLAFLQSHKEVHKDEKTCKVCNKTFQQRKLLLCHMKIHAANTYSCDQCDKSFPIKVRLIRHMSIHTEEKKFTCDRCAKAFTTSGSLRQHMRTHSGLRPYSCDQCEKTFLRKFELKIHLRVHTGEKPFKCNICEKSFSQSSSLKVHKQTHSGERPFTCEICGKTFGDKYTMRKHMVLHGGARPTACDLCGKICNSRSSLYYHMKAHREGPEDKPACDRCYKTFSNKSHLTRHMKIHLRGSLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705290;
90% Identity: iTF_00700320;
80% Identity: -