Basic Information

Insect: Eupithecia inturbata
Gene Symbol: ush
Assembly: GCA_963662085.1
Location: OY759180.1:1967866-1971894[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0081 0.59 11.3 0.2 1 20 111 130 111 132 0.94

2 9 3.3e-05 0.0024 18.8 1.6 1 23 167 189 167 189 0.99

3 9 0.026 1.9 9.7 1.2 2 20 219 237 219 239 0.93

4 9 0.023 1.7 9.9 4.1 2 21 480 499 479 500 0.95

5 9 0.0067 0.49 11.6 0.2 3 20 528 545 526 547 0.90

6 9 1.4 1e+02 4.3 0.0 2 23 580 601 579 601 0.94

7 9 0.0044 0.32 12.2 1.2 1 23 607 629 607 629 0.99

8 9 0.056 4.1 8.7 2.6 1 23 668 691 668 691 0.96

9 9 0.067 4.9 8.4 0.8 2 20 728 746 728 748 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0081	0.59	11.3	0.2	1	20	111	130	111	132	0.94
2	9	3.3e-05	0.0024	18.8	1.6	1	23	167	189	167	189	0.99
3	9	0.026	1.9	9.7	1.2	2	20	219	237	219	239	0.93
4	9	0.023	1.7	9.9	4.1	2	21	480	499	479	500	0.95
5	9	0.0067	0.49	11.6	0.2	3	20	528	545	526	547	0.90
6	9	1.4	1e+02	4.3	0.0	2	23	580	601	579	601	0.94
7	9	0.0044	0.32	12.2	1.2	1	23	607	629	607	629	0.99
8	9	0.056	4.1	8.7	2.6	1	23	668	691	668	691	0.96
9	9	0.067	4.9	8.4	0.8	2	20	728	746	728	748	0.92

Sequence Information

Coding Sequence: ATGGTCCTAGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGTACGCCAAGCTCGGGCGCCGCGTCGCCGGCGTCCGGCGCCTCGCCCGCCGCGTCCGCGACCGCGTCGCCGCCGCGTCTACGCCTCAACACTAGCCTGGCCACCGACCCAGCGCTTGCTCCAACAGCGACGGTCCTGAAACGAGAGCCTCCGTCGCCGTctccgccgcccgcgccgcctcAAGCTTCCAACACTCCCCAGCCAAGGGATTACCTGGCCGTCGCAGCTGCGGCTTTCCCTGGTCTATTCCCCGCGGCTGGTCCGCCTGGCTATATCTGCAAGCCGTGCGGTATCCGCTATTCTTCTCTCAGCACGCTACAAGCGCACCAAGAGCACTATTGCTCGAATCGCCGTCCGAAAGAAGGCACCGATTCCCCGGCCGATGCCGCGGACGAGTCTAGCGGAGACTCAAAGACTCCACGACCGCCTAACAAGCAGTACCAGTGCACGTACTGCTCCTATAGCGCGGATAAGAAAGTCAGCCTGAACCGGCACATGCGCATGCACTCGTCCTCGCCCGTGAGCAGCAGTACGCCGGCTCCAGCGCCCACTTCCAACGGCGAGACGGCGGACAGTCCGCCGGCGCCGGATCGCTACTGCACGGACTGCGACATCCGCTTTAGCTCAATAAAAACTTTCCGCGCGCATAAAACTCACTACTGCAGTACGAGGCAGGTTGTCAAGAACACGCCGGCCGTCACGAGAGGGAGCTCAGCGTCAGGCTCCGCACCGCCATCACCAGGCCCCACCCCGCCGGCTGCAAGTGGCTATGCCCTCGCGTTGCCCACGACACCGATCCTGATATTACCGATAGGGCTACTCAGCAAAGCCAGCACGCTCCCTGGCACCACTCTTCCCGACCCGGATACCCCGTGCTTTCTCCTACCCAATGGAACGTTTCAACCCTTTAGCCATGCGCTGCCGAACTTACCCACCGATGGGAAAGCAGCTGAGGTGCTCAAATCTGCGAATAGGCCTCGAGAAAACTCTAGAGATGGCGGGCAGACACCGTTGGATCTGAGCATGAGGCGAACCCCCGAATCTGTGACGATAGATGAACATGAGAAAGAGAATAGGATGAGGTCGACGACCCCGGAGCAGATAGTATGTGCGCCGTCATTGCCCGGCTCTCCTGGGACACCGTCGCCTTCTCCACGACGATCGTCTTCCCCGGGTGGAGAGAGCTCGCCGAAACGACGACGACGAAATAGTTCCCGAGGCCCGACTCCGAAACCGCCAAGCGTACCCTCACCGCCCGAAGAAAAGTTCAACCCCGGCCCGCCTGTGCTCCTCCCCCCGGGCCTAGCCTTGCGTCTCGCAGCAGAACTGCCCGTGACCGGCATCTCTCCCCAAATGCTGGTAAAGCAGGGAGTATCCAAATGCAAAGAGTGCAACATAGTCTTCTGCAAGTACGAGAACTACAAAATCCATAAGAGGCACTATTGTTCCGCTGGGGGAGGCGAAGACCGATCGAGCCCAGCGCCTGAACCCGGTCCACCGCAGCAGTACCGGCAACTGATCTGCCTAGCTTGCGGGATCCACTTCAGTTCGCTGGACAATCTGACAACGCACCAGAGTTACTACTGCACGAAGAGGGAAACGCGTTCACCTCGCGCCGCCGTTGCCGCAACACCTGTCATCGAGGCTAGAGTGACAACTGGAACTGAAGGTGGCTGGAAATGCCCGTGCTGCGACGTGGTGTCCCCTACGGCAGCGGCGGCCCAGCGGCATATGGAGGCCCATGCGGGCGTGAAGGCCTTTCGCTGCACTATATGCCAGTACCGCGGGAACACGCTTCGGGGAATGAGGACTCATATACGCATGCACTTCAATAATAAGAAGCCCGCTGAAATGCAGGAAGAAAGCTACATAGCATGCGTGCTAGAAGACGACAACCGAGAGGCCACGTCCCCCAGCCCGGCAGCGACGGGTGAACGCATCCACCGCTGCAACCACTGCGCCTACACATCCACCTACCGAGGGAACGTCGTACGCCACGCGAGACTCGTCCACGCCACGGACGAACCAGAGGAAGAGCGGCCCGAGCCTTCACCCCCTGTAGTACCCCTCACAGTCGTTGAGATAAAAAAAGAACCAGGCACGGAGGAAGAAACCCCTAACTACTGCAAAACCTGCGACATATCCTTTAAGTACGTGAATACGTATAAAGCACATAAGCAGTTTTACTGTAAGGCCACTCCGGAGGCTGCTGCTAATAACAATGTGCCGGCGCCTAGGGTAAGCGATGCAGCAGTGCTATAG
Protein Sequence: MVLGEDEEWGNESEAMPGEPRTPSSGAASPASGASPAASATASPPRLRLNTSLATDPALAPTATVLKREPPSPSPPPAPPQASNTPQPRDYLAVAAAAFPGLFPAAGPPGYICKPCGIRYSSLSTLQAHQEHYCSNRRPKEGTDSPADAADESSGDSKTPRPPNKQYQCTYCSYSADKKVSLNRHMRMHSSSPVSSSTPAPAPTSNGETADSPPAPDRYCTDCDIRFSSIKTFRAHKTHYCSTRQVVKNTPAVTRGSSASGSAPPSPGPTPPAASGYALALPTTPILILPIGLLSKASTLPGTTLPDPDTPCFLLPNGTFQPFSHALPNLPTDGKAAEVLKSANRPRENSRDGGQTPLDLSMRRTPESVTIDEHEKENRMRSTTPEQIVCAPSLPGSPGTPSPSPRRSSSPGGESSPKRRRRNSSRGPTPKPPSVPSPPEEKFNPGPPVLLPPGLALRLAAELPVTGISPQMLVKQGVSKCKECNIVFCKYENYKIHKRHYCSAGGGEDRSSPAPEPGPPQQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRAAVAATPVIEARVTTGTEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICQYRGNTLRGMRTHIRMHFNNKKPAEMQEESYIACVLEDDNREATSPSPAATGERIHRCNHCAYTSTYRGNVVRHARLVHATDEPEEERPEPSPPVVPLTVVEIKKEPGTEEETPNYCKTCDISFKYVNTYKAHKQFYCKATPEAAANNNVPAPRVSDAAVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00662644;
90% Identity: iTF_00663582;
80% Identity: -