Eint024562.1
Basic Information
- Insect
- Eupithecia inturbata
- Gene Symbol
- -
- Assembly
- GCA_963662085.1
- Location
- OY759205.1:2824160-2826564[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.11 8.2 7.7 1.2 1 21 58 78 58 79 0.96 2 18 0.42 31 5.9 1.5 2 23 107 128 107 128 0.94 3 18 0.0065 0.48 11.6 0.3 2 23 151 172 150 172 0.97 4 18 0.012 0.91 10.7 0.1 1 23 176 198 176 198 0.95 5 18 0.0046 0.34 12.1 0.1 1 23 203 226 203 226 0.90 6 18 0.0094 0.69 11.1 2.8 1 23 232 255 232 255 0.96 7 18 0.001 0.076 14.1 1.3 1 23 262 285 262 285 0.98 8 18 1e-05 0.00077 20.4 4.2 1 23 292 314 292 314 0.97 9 18 6.9e-06 0.00051 21.0 2.6 1 23 320 342 320 342 0.98 10 18 1.1e-05 0.00077 20.4 0.5 2 23 346 368 345 368 0.96 11 18 0.015 1.1 10.5 1.1 1 23 447 470 447 470 0.96 12 18 0.011 0.81 10.9 0.7 2 23 497 518 496 518 0.96 13 18 0.5 37 5.7 1.7 1 23 541 563 541 563 0.97 14 18 0.004 0.3 12.3 0.3 1 19 567 585 567 588 0.87 15 18 0.067 4.9 8.4 0.2 1 23 599 622 599 622 0.96 16 18 0.04 2.9 9.1 1.3 1 23 628 651 628 651 0.90 17 18 0.0096 0.71 11.1 1.2 1 23 658 681 658 681 0.88 18 18 0.0027 0.2 12.8 2.1 2 23 691 712 690 712 0.97
Sequence Information
- Coding Sequence
- ATGACCGACGATACTTTAGTAAAAGTAGaggataataattatttagaagtGAAACCGAAACCCAAATACCAGCGCAGCGCGAGAGCAGAGGCACGCATCGCAATAAAGAAGAACGCCACTTCTATCCTCCAATGCTGGACCTTGATCCCCTTTCGATGGAAAAAGAATAAATTCAAATGCGCTTACTGCGAGGACAACTTTACTGAATGCAACACACTCAGGGAGCATATAAGGCTTTGCTCCGCTCAACACAACATCAAGGACATCTACAACAAGTTCAAGGAGATGCCACTTATAAACGTCGATAGCACCGAAGCCGTATGCTGCTTCTGCTCCACCCCCTTCTCAAACGTCAGACAAATGCGCGAGCACGTCATCCAACACGGCTTCGAGTTCGATACCAACCACCCGGACGGCGTCCTCCCGTTCTACCTAGACAAAGAATCCTGGAAATGCGTGATATGCGAAGAGAAATTCAACAATTTCTTAAAACTTTACGAGCATATGAACGTTCACTATCAGCACTACATTTGTGCAACTTGCGGCAAGGGGTACATGACCGCTCCTAGGTTGCGAAAGCACTCAGAAGTGCATATATCTGGCTCGTTTCCATGTTCGGATTGTGGTAGGGTTTTTACTATGAGAGCAGCGAGAGACTCTCACAAGGCGACTGCGCACGCAAAAGGCTCTAGATACGAATGCCCCCACTGCTACATAAGATTCGACAGCTACTATCACAGAATGGCACATTTAAAAGAAGCACACAGTGAGAAGGAAGTCGTCTACAGCTGTGCTCATTGCGAACTCTCTTTCAAAACGAGTGGAAAACGAGCCAGTCACATTCGTTCAGTCCATTTCCCACCCAAACACGACTTTAGCTGCACATTCTGTGATTGGCATTTTAAAACTAACTACGAACTGAAGAGACACATGGTTCGGCATACGGGAGAGAAGAACTTCCACTGCTATGTTTGTGGCAAGTCCTTTCCCAGAAACAGGGCCTTATCGACCCATCTCAAAACGCATCAAGATCTTAATTGCAAGTGGTGTGGATTAGTGTTTAAACAGAAGAATCAATTGGTGCTTCATTTAAGAACTATGCATCCGGAATTGATTGATATTAATAgttcAGTTAATGAAGCTCAATCAATATTAGGTGCGGCTAAACGGAAATTAAAAGAAGATGTTAGTGAACGTCAGATGCGTAGGCGTCGGCGAGCCAACAACGAGTTGCCGGAAGAGTCGGAGAAACGAATCTCGAAGACCATGATGAGACGAAACGCTATGACCATTCTAGAGAGCTCCACCGCCTGGGCCTTTCGCTGGTTTCACGGAGCTTTTTATTGCGCATACTGTGATTGTAAATACGTCGACATAAAACTATTGAGAGAACACGTTGCTACCAATCACCTATACGAACCACCTTCTAAAACAGTTTTCTCAAAACTAAAGGAGAGTAACATCGTTAAAATAGATATAAGTCAACTGCATTGCAGACTTTGCGATATTAGTCTAGATGGCATATCAAATCTTAAAACACACATTAATACACACGGGAAGTACATCCAAGACAAATACGGCGATGGAGTTTTGCCGTTCAAACTGGATGATAGCAACTGCTTTCATTGCCAAATGTGCACATCCCAGTTCGCAACCTTTGGCAAAATAAACGAACATATGAACGCGCATTATCAGAACTATGTCTGCGACACTTGCGGGAAAGGCTTTGTTACAAAATCCAGATTTAGGCCTCATGCTCAAACGTGCTTTAACAATTTACCGGAAAAGGGGAATTTCGCTTGCGGAATATGCGCTGAATTCTTTAGCTCTAGAGCAGAGCGCCTAAGCCATCGTTCGACAGTCCATCGCAAGGGAGTCCGGTACAATTGCCCTCGGTGCTCCGAAGTATTCACGACATACCACGCCAGAGCGAATCATTTGGTAAACTTTCACGCGGAAAAAAACAGGGAATATGTCTGCAGTGTTTGTAATCAGTCGTTTCCTACGAGTTCTAAGCGAGCTGCACACTGCAGGCTTGTGCACAGATCTCCAGTGCGAAGCGAAAGCCTCAAGTGCTACTATTGCTCTGCTCATTTCCCTAGCAAATGGAGACTTGGTCGGCATATGAGGTCGCATGGACGTAAAGTAGTCTGA
- Protein Sequence
- MTDDTLVKVEDNNYLEVKPKPKYQRSARAEARIAIKKNATSILQCWTLIPFRWKKNKFKCAYCEDNFTECNTLREHIRLCSAQHNIKDIYNKFKEMPLINVDSTEAVCCFCSTPFSNVRQMREHVIQHGFEFDTNHPDGVLPFYLDKESWKCVICEEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHISGSFPCSDCGRVFTMRAARDSHKATAHAKGSRYECPHCYIRFDSYYHRMAHLKEAHSEKEVVYSCAHCELSFKTSGKRASHIRSVHFPPKHDFSCTFCDWHFKTNYELKRHMVRHTGEKNFHCYVCGKSFPRNRALSTHLKTHQDLNCKWCGLVFKQKNQLVLHLRTMHPELIDINSSVNEAQSILGAAKRKLKEDVSERQMRRRRRANNELPEESEKRISKTMMRRNAMTILESSTAWAFRWFHGAFYCAYCDCKYVDIKLLREHVATNHLYEPPSKTVFSKLKESNIVKIDISQLHCRLCDISLDGISNLKTHINTHGKYIQDKYGDGVLPFKLDDSNCFHCQMCTSQFATFGKINEHMNAHYQNYVCDTCGKGFVTKSRFRPHAQTCFNNLPEKGNFACGICAEFFSSRAERLSHRSTVHRKGVRYNCPRCSEVFTTYHARANHLVNFHAEKNREYVCSVCNQSFPTSSKRAAHCRLVHRSPVRSESLKCYYCSAHFPSKWRLGRHMRSHGRKVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702286;
- 90% Identity
- -
- 80% Identity
- -