Eint024542.1
Basic Information
- Insect
- Eupithecia inturbata
- Gene Symbol
- -
- Assembly
- GCA_963662085.1
- Location
- OY759205.1:2675452-2680133[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.5e-05 0.007 17.4 2.0 1 23 65 88 65 88 0.97 2 17 0.27 20 6.5 0.3 2 23 111 133 110 133 0.93 3 17 0.022 1.6 9.9 2.1 1 23 155 178 155 178 0.94 4 17 8.4e-05 0.0062 17.6 0.4 1 23 182 204 182 204 0.96 5 17 0.079 5.8 8.2 0.4 1 23 209 232 209 232 0.90 6 17 1.7e-06 0.00012 22.9 0.3 1 23 269 292 269 292 0.97 7 17 6.5e-05 0.0047 17.9 0.2 1 23 298 322 298 322 0.98 8 17 1.3e-05 0.00093 20.1 0.6 1 23 328 350 328 350 0.98 9 17 9.8 7.2e+02 1.6 0.3 8 23 407 423 399 423 0.87 10 17 0.28 20 6.5 0.5 2 23 451 473 450 473 0.92 11 17 0.00066 0.048 14.7 0.5 2 23 493 514 492 514 0.97 12 17 0.00013 0.0096 16.9 0.3 1 23 518 540 518 540 0.98 13 17 0.00011 0.0082 17.2 1.3 1 23 545 568 545 568 0.94 14 17 0.027 2 9.7 1.4 2 23 575 597 574 597 0.95 15 17 0.0031 0.23 12.6 0.8 1 23 604 627 604 627 0.96 16 17 0.061 4.5 8.5 0.5 1 23 631 653 631 653 0.90 17 17 0.0011 0.077 14.1 3.4 1 23 658 681 658 681 0.95
Sequence Information
- Coding Sequence
- ATGCCGTTACGAAAAATGACGGCGAGCGATGTGAGCATCGAAAATATTCGTGCTCTTGgtaaGGAGCCTGAACCGGATAACGGGAATGAGATGACACTCAAAGAGCATGTTGTAATTCTAACGAAACATAGAGATAATCTGTTTAGTGTGCTCGCTTACTCCAACGCAACGCCGATCGGAAGCAACTGCGGGTTCGCCTGCTGCTTCTGCCCGAAACAGTACCGAGACGCGGCCGAACTTAAAAAACACACCCGCACAGAACACAAGCCGGAAAAGTACCAGATCAAGCAGGTTCGATCGCACTGCGTTAAACTGGATATAACAAAACTGACATGCACTATTTGTCTTAAAGATATAGATGATATAGAGTCATTGATGAGACATCTGAAGTTTAAACACGGGAAAGTTATGCATTACGATATCAAAAACCATATCATACCGTTTAGGTTTGACGACAGTGAATTTAAATGTATCAAATGTGGACGGATTTTCGAATTTTTCAAACATCTTTCGGAACATATGAACGATGTACACTTCAGGAACTATGAATGTGATAAGTGTACGAGAGGATTTGTAAATAAGTCAACGTTGGCAACACACGCGTTGCAACACAAGACTGGGCATTTTCCCTGCGATTTCTGCGCAAAAGTCTTCACCACTAAAATCAGAAGATACGAACACGCGCGTGTAGCACATAAGCTAAAAAGCAAGGGACGGAAATGCTTCTTCTGCGAAGAAAGATTCATAGATTCGACAAGGAAACTAAAACACGAGATTGAGCACCACGGCGTGCCGCAAAAACTGTACGACTGCAAAGCTTGCGGCAAATCATTCCCCGTCAAACGGAACTTGCAGCGTCATATACAAATGATACATTTACTACATCGTCCGTTCAAATGTGAAATAGACGGATGTGATAAAGGATTTTTCATGAACTCGCAGTTGGCAACACATATACTAACGCACGGGGATGAGAAGCCCTATATATGTGATCAATGTCCTAAGACTTATAAGTCCAAGACTGCCCTCGTATTGCATATGTACACGCATGGCGATAACAGAGAGTTTCAATGCAGGATATATAACGAAGAAATCTTCATAGCTCGTACCGAGACATCACCGTTCGTGGCAGAAATGAGAACACTTCTGCGTTACTTCAACGTCACTCCGTTCAGAAACCGCGCATCGGTCACCATCTGCTACTACTGCATCAAACGTCGCGAGTTCGACTCCTCTCAGGATATGAAGACACACACCAGGCTCTACCATACAGACCAACAGGACAAGATAGAGATCGCACTCCGCCCAGCCTATGCCAACGAGCTCGTCAAATTAGATACCCACGACCTAAAATGCGTCGTCTGCAACCAACAAATCCACACCTGGGCACAACTCTTCACGCATCTAGAAGAAAACCACGGTACAACTATCACatgcaaaaataaattgttgCCGTTCGATTTGACAACAGAGAACCAATGCGTCCTCTGTACGAAAAGCTTCATCTCCATAACGCAACTCGATTGGCATATGAACAAGCATTATCCTAACTACATTTGCGGCCATTGCGGAGAACCTTTCGCGAGCCTAGCAAGATTCAGAGCGCACGAGAGAACCCACAAAACGGGTAAATATCCGTGCAAGATCTGTAACAAAGTGTTCTCGTTGCAAAAATATATGACGAAGCATGTTTCATTGAAACACATGAAGGTTGCGAaaatcaaatgtttttattGCAAGGAGTATTTCGTGACTGAGTATAACAGGCACGCTCATATAGCCAAGGAGCACAGCGAGCATGTCCAAATGTACACGTGCGAAGTGTGCGGCGAATCTTTCGACTGGCTACGGACATTCTCCAGGCATATGACGCGGAGACACAGCACGCAGTTCTATTGTAAGATTTGCGCAAAGTCGTTCCTTTCGAGCAAAGCGTTGGAATACCATAATGTCATACATAACGGTGATAGTTATGAGTGTCCGGTGTGCCAGAGATGTTACTCGTCCTTTAACACCTTGAGGAGTCATGTTAAGTTTTCGCATAAGAATCAACCAAATAATGTGAAGGGGATATTTGGTATCTAG
- Protein Sequence
- MPLRKMTASDVSIENIRALGKEPEPDNGNEMTLKEHVVILTKHRDNLFSVLAYSNATPIGSNCGFACCFCPKQYRDAAELKKHTRTEHKPEKYQIKQVRSHCVKLDITKLTCTICLKDIDDIESLMRHLKFKHGKVMHYDIKNHIIPFRFDDSEFKCIKCGRIFEFFKHLSEHMNDVHFRNYECDKCTRGFVNKSTLATHALQHKTGHFPCDFCAKVFTTKIRRYEHARVAHKLKSKGRKCFFCEERFIDSTRKLKHEIEHHGVPQKLYDCKACGKSFPVKRNLQRHIQMIHLLHRPFKCEIDGCDKGFFMNSQLATHILTHGDEKPYICDQCPKTYKSKTALVLHMYTHGDNREFQCRIYNEEIFIARTETSPFVAEMRTLLRYFNVTPFRNRASVTICYYCIKRREFDSSQDMKTHTRLYHTDQQDKIEIALRPAYANELVKLDTHDLKCVVCNQQIHTWAQLFTHLEENHGTTITCKNKLLPFDLTTENQCVLCTKSFISITQLDWHMNKHYPNYICGHCGEPFASLARFRAHERTHKTGKYPCKICNKVFSLQKYMTKHVSLKHMKVAKIKCFYCKEYFVTEYNRHAHIAKEHSEHVQMYTCEVCGESFDWLRTFSRHMTRRHSTQFYCKICAKSFLSSKALEYHNVIHNGDSYECPVCQRCYSSFNTLRSHVKFSHKNQPNNVKGIFGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706281;
- 90% Identity
- -
- 80% Identity
- -