Eint024296.1
Basic Information
- Insect
- Eupithecia inturbata
- Gene Symbol
- -
- Assembly
- GCA_963662085.1
- Location
- OY759204.1:7674844-7683233[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00057 0.042 14.9 2.1 2 23 158 179 157 179 0.96 2 12 3.2e-05 0.0023 18.9 0.7 2 23 184 205 183 205 0.96 3 12 4.3e-06 0.00031 21.6 1.6 1 23 211 233 211 233 0.98 4 12 0.00074 0.055 14.6 0.3 1 23 238 260 238 260 0.97 5 12 8e-06 0.00059 20.8 0.2 1 23 266 288 266 288 0.98 6 12 3.4e-05 0.0025 18.8 0.4 1 23 294 316 294 316 0.97 7 12 2.2e-05 0.0016 19.4 1.8 1 23 322 344 322 344 0.96 8 12 7.1e-06 0.00052 20.9 0.2 1 23 349 371 349 371 0.98 9 12 0.028 2.1 9.6 0.8 1 23 377 399 377 399 0.97 10 12 0.001 0.074 14.2 2.7 1 23 430 452 430 452 0.98 11 12 4e-06 0.00029 21.7 0.7 1 23 458 480 458 480 0.98 12 12 4.1e-06 0.0003 21.7 0.5 2 20 487 505 486 507 0.94
Sequence Information
- Coding Sequence
- ATGTCGTCTTCGCAATCTTTATCAGACATCTGTCGAGTCTGCCTGGCGAGCGACGTGAAGATCTACAATATTGAAGATATCCGCCTACTGGAAATGTATGAGAAACTCACAAGTGCCCAGCTGCACAGTAAAGACGGGCGCCCGCGCGCCGTCTGCTACATCTGTGTGTCTCAGCTGCAGCGCTGTCGACGGCTCACCATGCGGGCGCAGCGCTCCGAGAAGTTCCTGAACGATCTACTGCTAACCAATCAGAAGgTAACAAAAGAAACGGTGGCAACTCTCAAACTGTCTTCTACTCAAACCCTATCAATAACCACATTAGAATCAGTTTCCTACGACGGCTCAACAGATGGCGCTGACACAGAAATATCTATCAAAGAAGAATACTTCGACTACGATGAACCCAGCGAAGAAATATTCACCAAAGTCGAAAAAGTCTCTGAAGAAATCAAGGAAGAGATTTTATACCTTAACTGTAACGACTGCGACTTGAAATTCCATAGCAAGAAATTACTCATATCTCACATAAAGTTACACAATAAGAGAACTTACTGTAAGAAATGTGATAAGTCATATTCCACCGTCAGTGCGTTGAAGGGTCACATGACTATACACACAGGAGAAATGCCGTATGCTTGTCATATATGCAGCAGGACGTTTCGACGAAAGCCATACTTAGAAGGGCATATAAGAATGCACACAGAAAAGCCGTATTTCTGCAGTACTTGTAAACTGGGTTTTACGGAGGCCGAGGGCTTGAAAAAACATATGGTAGTACATGCTAAAGGCAGGCCTTTTATATGCAGCCAGTGTGGTATCGGCTTTCCCTACAAAAGTTCGTTAGATCGACACCAAAGAGTCCACACTGGTATTAAACCTTACGATTGCAAAAGGTGTAAGAACTCCTTCGCTGACCAAAGCGGTCTGGCCAAGCACATGCTTATCCATGAAGGTGTAAAACCTTTTCCTTGCAATATGTGTGACTCTACTTTCAGACACGCGGCCAGCTTGAAAAGACATATGTATTTGCATATCCAAAACCCATTTACATGCAATGTGTGTGATATGGCATTTGATGAAGAAAATGATTTGAATAAACATATGAGAGTGCATGTTGGAGAGAAGCCATTCGTATGTGACAAATGCGAGTTGAAATTCGACATATACACGATGTTTAGAAAGCATTTAGAAATACACGGTGAGAAGAATGAGGAAAAACCACTGCCTTCATCTACGAGAATTATTCTTGATGCGTCTAGTGTCCGAAGTAAACATAAGAAAAAGAAACATACATGCGACTTGTGTAAAAAGGAGCTATTCAGTAATGCGCACTTGATCCTTCACATGAGGATCCATAATGACGAACGACCATTCCCCTGTGACGAATGCGAAAAAAAGTTTCGCACCAAAGCGGTACTACAAGCTCACAAGAGGACACACTCGGGAGAAAAAGTCTGCTCCTGTGAAATCTGTGGTAAATCCTTCTCGCAAACGGGGAGTTTGAATAAACACATGGCCGATGAAATATCCTTTGGTGTCGACCAGATTAACTCTGACCTGGAAAATATTCACGCATGGGCAAAGGCCTTTGGCCTTCTGGTCAACCCATCGAAGTCTCAAGCTCTAATCTGCGGCAGCCCTTTCATGCTGAACAAAGTTCGACAATCACCAATTCCCCCTCTATTCATCAATGACTGTCCTATCAGCTACTCTGCTTCTGCCAAGAACTTGGGTGTCATCTTTGACCCGTTGTTATCCTGGCAAAAGCACGTCAACGGAATCAGCCAGAGAGTTCACTATTCGTTTCACTCTCTCAAGAGATTTCAGTATTTTCTTCCACTGCAAACCAAAATCACTTTAGCGCAATCACTCCTTCTTCCCTTATTAGATTATGCTGACTCTTGTTTCCTCGACGCCACGGAGGAAATCCTCAACAAACTAGAACGTCTTCAAAATCTGCGCATCCGgtttattttcggtttgcgtaaatatgatcacgtctcaatgttcagagatcagttaaaatggcttccaattcGTCGCCGGCGTGATCTACACGTTCTCTCGCTTCTTTATAACATTCTGAACAATCCCCTTTCTCCTTCTTACCTTCGTGAGCGTTTTGAGTTCTTTTACCCTCATGATAGACCCTGCAGAACATCTTTTTCCCTTATTCTTATATTCCCTGCTCACTCATCCAGCCGTTACGGTGGCTCCTTTACCGTCGAGTCCGttaggttatggaattctctcccacacgatattcgtgctagcccgtcactcttcaccttcaagcgtaaagtcaaagagcattacctatctttatga
- Protein Sequence
- MSSSQSLSDICRVCLASDVKIYNIEDIRLLEMYEKLTSAQLHSKDGRPRAVCYICVSQLQRCRRLTMRAQRSEKFLNDLLLTNQKVTKETVATLKLSSTQTLSITTLESVSYDGSTDGADTEISIKEEYFDYDEPSEEIFTKVEKVSEEIKEEILYLNCNDCDLKFHSKKLLISHIKLHNKRTYCKKCDKSYSTVSALKGHMTIHTGEMPYACHICSRTFRRKPYLEGHIRMHTEKPYFCSTCKLGFTEAEGLKKHMVVHAKGRPFICSQCGIGFPYKSSLDRHQRVHTGIKPYDCKRCKNSFADQSGLAKHMLIHEGVKPFPCNMCDSTFRHAASLKRHMYLHIQNPFTCNVCDMAFDEENDLNKHMRVHVGEKPFVCDKCELKFDIYTMFRKHLEIHGEKNEEKPLPSSTRIILDASSVRSKHKKKKHTCDLCKKELFSNAHLILHMRIHNDERPFPCDECEKKFRTKAVLQAHKRTHSGEKVCSCEICGKSFSQTGSLNKHMADEISFGVDQINSDLENIHAWAKAFGLLVNPSKSQALICGSPFMLNKVRQSPIPPLFINDCPISYSASAKNLGVIFDPLLSWQKHVNGISQRVHYSFHSLKRFQYFLPLQTKITLAQSLLLPLLDYADSCFLDATEEILNKLERLQNLRIRFIFGLRKYDHVSMFRDQLKWLPIRRRRDLHVLSLLYNILNNPLSPSYLRERFEFFYPHDRPCRTSFSLILIFPAHSSSRYGGSFTVESVRLWNSLPHDIRASPSLFTFKRKVKEHYLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -