Eint011605.1
Basic Information
- Insect
- Eupithecia inturbata
- Gene Symbol
- -
- Assembly
- GCA_963662085.1
- Location
- OY759187.1:11778126-11807866[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00027 0.02 16.0 3.3 1 23 124 146 124 146 0.98 2 15 1.2e-06 9.2e-05 23.3 2.9 2 23 151 172 150 172 0.97 3 15 0.0022 0.16 13.1 0.8 2 23 176 197 175 197 0.98 4 15 0.00067 0.049 14.7 0.3 1 23 214 236 214 236 0.98 5 15 0.014 1 10.6 1.2 1 23 244 266 244 266 0.97 6 15 2e-06 0.00015 22.7 3.2 1 23 272 294 272 294 0.99 7 15 3.2e-05 0.0024 18.9 1.7 2 23 301 322 301 322 0.97 8 15 2.2e-07 1.6e-05 25.7 0.4 1 23 328 350 328 350 0.96 9 15 0.27 20 6.5 2.0 1 13 356 368 356 369 0.89 10 15 7e-06 0.00051 21.0 1.3 3 23 366 387 366 387 0.96 11 15 7.7e-06 0.00057 20.8 0.7 1 23 393 415 393 415 0.97 12 15 0.00032 0.024 15.7 0.5 1 23 421 443 421 443 0.97 13 15 0.15 11 7.3 5.6 3 23 451 471 449 471 0.97 14 15 4.1e-07 3e-05 24.8 1.0 1 23 477 499 477 499 0.98 15 15 0.00027 0.02 16.0 0.8 1 20 505 524 505 527 0.94
Sequence Information
- Coding Sequence
- ATGAAGAGTAATGTTACCTTGGTGCATCTTTACGACCCAGTGTGTGTTGATGAGAACAGCAATATTCAATTGGTTGTACTGCTGTTGGAATGTGCCGCGATACAAGTGATGAAAGATGATGGGCTGCCTCAAAACCTTTGCGAGGACTGCATCAAAGTGCTCCAACTAACTTATACATTTCGTAGTCAAGCTGCGAGGGCAGAGGAACAGTTCAGAATACTTCTACAAGATAATGTGAAACAGGAAATCAAGGCAGAGGATGACCAAGACTTTGATTATGATAACTTCTCTTTTGATAATGAAGACCTCAAGCTTGAACCCGATGAAAACGATAACAAACAAATAGACAATAAAAGTGATATAAAACCCTACACCTGCCCAACATGCAGCAAAAGTTTCACAAAGGATAAGAAATACCAAAAACACTTACAATTACACAGTTCACAATTAAAATGTAcatattgcaacaaaacatttAGTAAAGAAAGCTCACTCCAGAAACATCTGTTGAAACATGACCCGAATAAATGTCAGATATGTTGTGAAACATTTGCTGATGAGTCCGAGTTGTTCCAACATATTGCAACTCATAACATAGCTACTATCAAGGACGAACAAGTCGATCAAGTTCCCTCATCATACCCTTGCAATGAATGTGGGAAGAATATGACCAGTGGTAAATCTCTAATACTGCACCAGAAAACGCATAAACAAGGAAAACCGCTGAGCTATACTTGTGATGTTTGTCAAAAAGAGTTTCTTTCAAAAGCCCTGGTGAAGCGACATTTTAAACTACATGGTAAAGAAAAGCCGTTCAAATGCACACAATGTTCACGGAGTTATTCTAGATCAGATCAGCTGAAACTTCATATGAAATCTCACTCAGAACAGAAGTCTAATGTCTGTTCCTATTGTAATAAAGcATTCATCCAAATATGCAGTCTGAAGGACCACATCAGAACGCACACAGGAGAAACCCCGTACCTTTGCTCGGAGTGCGGCCGTGGCTTTGCTAACAGCTCCAACTTGAGGCAGCACATGCTGAGACATACTGGAGTGAAGCCGCATGCTTGCAAGCTGTGTCCTAAGTCCTTCTGCACTAAAGAGTGCGGCCGTGGCTTTGCTAACAGCTCCAACTTGAGGCAGCACATGCTGAGACATACTGGAGTGAAGCCCTATGCTTGCAAGATGTGTCTTAAGTCCTTTAGCACTAAAGGTCAGATGACAGCACACATGGTAACCCACACAGGCGCGCACCCCCACGAGTGTGCCACCTGCGGCGCCGCCTTCACTAAACTAACGTCGCTTAAGAAGCACGCCATGATCCATACGGGCCAGCGTCCGTACGGCTGCGAAACATGCCTTATGAGATTCACCTGCAAAGACCACTTAAAGCGTCACACGCGCATCCACACGGGAGAGAAGCCTTACCGCTGTCCGCACTGCGAACGAGCATTCACGCAGAGCAACGACCTCGTCAAACATATACGCGGACATCTTGGGGATAATATTTACGAGTGCTCAGTCTGCAACATGCGTTTCCGTCTCAGAAGCGAACTGAAGAAGCACTATCCCGTTCATTTCACGGACGACGCTTCAATACAGGACCACCTCAAGGCAGCTATAGACCAAGCGGTCTACGCAGCATCCTTTAGTTCTGCGCATCTGAGTGAGGGCGGGCGGATCCGCCCGGGCGGTATCAGTGTGCGGGCAGCCACGGACCGAGGCGGACTTGTTCGCTTCGAGATAATCACTTCGGATCGGTTCGACGCCGTGATCGTACACCTCCGTGACAACTTCTTCGCGGACGAACCGTTAAACAAAGCTGTAAAGCTCTGCCAGAGAGGGGAACCGCATGATGAGTTGGAGCGCCTCTGCCGAGCTACCATGGAGGATGGCCTGTCTATCGCGGCTCTGCATGAAGAACagGTGGACTGTTTGATGGAGTGTCGCATAGTGTCAGTAGACGCGGTGACACGCGGACGCGGACTGGCCAAGGAACTGGTTCAGCGCAGCCTGACTCTCGCTGGCCAGCGTGGCTTCAAGCTGTTCAAAGTAGACGCGACCGGGCACTTCTCCCAACGCATCTGCCGTTCGCTCGACATGACGGAGCTGAAGCGAGTCTGTTACCAGGAATATACAGATAAGGATGGACAGCCGGTGTTCGATATACCGCCGCCGCATCAAGCCCTCTGCATAATGGTCAAACAACTTCCGTGA
- Protein Sequence
- MKSNVTLVHLYDPVCVDENSNIQLVVLLLECAAIQVMKDDGLPQNLCEDCIKVLQLTYTFRSQAARAEEQFRILLQDNVKQEIKAEDDQDFDYDNFSFDNEDLKLEPDENDNKQIDNKSDIKPYTCPTCSKSFTKDKKYQKHLQLHSSQLKCTYCNKTFSKESSLQKHLLKHDPNKCQICCETFADESELFQHIATHNIATIKDEQVDQVPSSYPCNECGKNMTSGKSLILHQKTHKQGKPLSYTCDVCQKEFLSKALVKRHFKLHGKEKPFKCTQCSRSYSRSDQLKLHMKSHSEQKSNVCSYCNKAFIQICSLKDHIRTHTGETPYLCSECGRGFANSSNLRQHMLRHTGVKPHACKLCPKSFCTKECGRGFANSSNLRQHMLRHTGVKPYACKMCLKSFSTKGQMTAHMVTHTGAHPHECATCGAAFTKLTSLKKHAMIHTGQRPYGCETCLMRFTCKDHLKRHTRIHTGEKPYRCPHCERAFTQSNDLVKHIRGHLGDNIYECSVCNMRFRLRSELKKHYPVHFTDDASIQDHLKAAIDQAVYAASFSSAHLSEGGRIRPGGISVRAATDRGGLVRFEIITSDRFDAVIVHLRDNFFADEPLNKAVKLCQRGEPHDELERLCRATMEDGLSIAALHEEQVDCLMECRIVSVDAVTRGRGLAKELVQRSLTLAGQRGFKLFKVDATGHFSQRICRSLDMTELKRVCYQEYTDKDGQPVFDIPPPHQALCIMVKQLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -