Eins023847.1
Basic Information
- Insect
- Eupithecia insigniata
- Gene Symbol
- -
- Assembly
- GCA_947859395.1
- Location
- OX402021.1:5987534-5997302[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0002 0.013 16.3 1.9 1 23 86 109 86 109 0.96 2 17 0.0017 0.11 13.4 4.3 1 23 176 199 176 199 0.96 3 17 6.6e-05 0.0044 17.8 0.7 1 23 203 225 203 225 0.96 4 17 0.002 0.13 13.2 0.5 1 23 230 253 230 253 0.96 5 17 8.9 5.8e+02 1.7 3.1 2 23 261 282 261 283 0.85 6 17 1.7e-06 0.00011 22.8 0.3 1 23 290 313 290 313 0.97 7 17 3.3e-05 0.0022 18.8 0.2 1 23 319 343 319 343 0.98 8 17 7.8e-05 0.0051 17.6 1.6 1 23 349 371 349 371 0.97 9 17 3.5 2.3e+02 2.9 2.4 3 23 421 444 419 444 0.91 10 17 2.6 1.7e+02 3.4 0.9 2 23 472 494 471 494 0.91 11 17 0.0024 0.16 12.9 0.5 2 23 514 535 513 535 0.97 12 17 0.00012 0.0079 17.0 0.3 1 23 539 561 539 561 0.98 13 17 0.00036 0.023 15.5 0.8 1 23 566 589 566 589 0.94 14 17 0.00094 0.061 14.2 0.4 2 23 596 618 595 618 0.95 15 17 0.0015 0.096 13.6 1.0 1 23 625 648 625 648 0.97 16 17 0.00075 0.049 14.5 1.7 1 23 652 674 652 674 0.95 17 17 0.0011 0.069 14.0 3.5 1 23 679 702 679 702 0.95
Sequence Information
- Coding Sequence
- ATGCTGACCAAAAAATCCTCCTCGATTCTCTCTACGTTTCAAAACCAGAGCTCTTACCACAGTGACTACCAGTACCACATTAACGGCATATTCCTACAATCCTTAAACGAAAATTTTGTTGTAGGTAAGGAGCCAGAACTGGACGTGAATGAGATGACACTCAAAGAGCATGTCGTTATTCTAATGAAACATAGAGAGAATCTCTTCAGTGTGCTTGCTTATTCCAACGCAACGCCCATCGGAAGCAACAGCGGGTTCGCCTGCTGCTTCTGTCCGAAACAGTACAGAGACGCGGCCGAACTAAAAAAACACACTCGCTCAGAACACAAGCCAGAAAAATACGAGATCAAACAAGTTAGATCGCACTGCGTGAAATTGGATATAACGGAACTGAAATGCAAACTTTGCTGTAAAAAAATTGAAGAACTTGAAACCTTGATGAAACATCTGAAGTTTAAACATGGGAAAAATATGCATTTTGATATAAAAAACCATCTTATACCGTTTAAATTTGATGATAGTGAATTTAAATGTGTCAAATGCGGACGGCCTTTTGATTTTTTCAAACATTTATGTGAGCATATGAACGATGTGCACTTTAGGAACTATGAATGTAAGAAGTGTACGAGAGGCTTCGTGAATAAATCTACGCTGGCAACACACGCGTTGCAACACAACACTGGCATTTTCCCCTGCGAGTTCTGCCCGAAAGTCTTTACCAGTAAGATCAGAAGAACCGAGCATGTACGCGTATCACATAAACTAAAAAGCATGGCGCGAAAGTGCTTTTTCTGCGACGAAAGATTCACAGGTTCAAGAAGGAAACTAAAACATGAGATCGAACATCACGGCGTCCCGCAAAAGCTGTATGACTGTAAAGCTTGCGGCAAATCTTTCCCCGTCAAACGGAACCTGCAACGTCATATACAAATGATACATTTGCTACATCGTCCGTTCAAATGTGAAATAGACGGTTGTGATAAAGCGTTCTTTATGAACTCTCAGTTGGCAACACATATTCTTACGCACGGGGACGAAAAGCCTTATAAATGTGATCAATGCCCTAAGACTTATAAGTCTAAGACAGCTCTTGTTATTCATAAATACAGGCATGAAGACAAAAGGAAGTTTGAATGCAAGTTATATAACGGAGAAGTCTTCATAGCACAGCCCGAGACACCCACGCTCGCTTTAGAAATGAGATCAATTCTCCGTTACCTCAACGTCACTCCGTTCAGAAACCGCGCCGCCGTCACCATGTGCTATTACTGCACCGAGCGTCGCGAGTTCGAAACCCCTCAGGATATGAAGACACACACCAGGCTCTGCCATCCAGACCAGCCGGACAAGATAGAGGTCGCTCTCCGCCCGACCTGGACCAACGAGCTCGTCAAACTAGATATCCACGACCTAAAATGCATGGTCTGCGACCAAAAAATCCACACCTGGACGCAAATCTTCACGCATCTAGAAGAAAATCACGCTACAACTATTACTAGCAAAAATAAACTGTTACCATTCGACTTGACAGCAGACAACAAATGCGTTCTTTGTACGGAGAGCTTCATCTCTATGACGCAATTGGATTGGCATATGAACAAGCATTATCCGAACTACATATGCGGCCATTGCGGCGAACCGTTCGCGAGCCTAGCGAGATTCAAAGCCCACGAGAGAACCCACAACACGGGCAAATATCCGTGCAAATTGTGTAACAAAGTGTTCTCGTTAGAAAAATATATGACAAAGCATATAGCATTGAAACACATGAAGGTTGCGAAAATCAAATGTTTTTATTGTGGCGAAGCTTTTGTGACAGAGTATAACAGGCACGCTCATATAGCCAAGGAGCACAGCGAGCATGTACAAATATACACGTGCGAAGTGTGCGGTGAAACTTTCGACTGGCTGCGGACGTTCACCCGGCATATGACGCGGAAACACAGCACACAGTTCTATTGTAAGATATGCACAAAGTCTTTCATTTCGAGCAAAGCGTTCGAATACCATAATTCGATACACAACGGTGATAGTTACGAGTGTCCGGTCTGCCAGAGATGTTACTCTTCCTTTAACACCTTGAAGAGTCATGTAAAGTTCTCACATAAGAATCAACCAAAGAATGTGAAGGGTATATTTGGTATTCAGTGA
- Protein Sequence
- MLTKKSSSILSTFQNQSSYHSDYQYHINGIFLQSLNENFVVGKEPELDVNEMTLKEHVVILMKHRENLFSVLAYSNATPIGSNSGFACCFCPKQYRDAAELKKHTRSEHKPEKYEIKQVRSHCVKLDITELKCKLCCKKIEELETLMKHLKFKHGKNMHFDIKNHLIPFKFDDSEFKCVKCGRPFDFFKHLCEHMNDVHFRNYECKKCTRGFVNKSTLATHALQHNTGIFPCEFCPKVFTSKIRRTEHVRVSHKLKSMARKCFFCDERFTGSRRKLKHEIEHHGVPQKLYDCKACGKSFPVKRNLQRHIQMIHLLHRPFKCEIDGCDKAFFMNSQLATHILTHGDEKPYKCDQCPKTYKSKTALVIHKYRHEDKRKFECKLYNGEVFIAQPETPTLALEMRSILRYLNVTPFRNRAAVTMCYYCTERREFETPQDMKTHTRLCHPDQPDKIEVALRPTWTNELVKLDIHDLKCMVCDQKIHTWTQIFTHLEENHATTITSKNKLLPFDLTADNKCVLCTESFISMTQLDWHMNKHYPNYICGHCGEPFASLARFKAHERTHNTGKYPCKLCNKVFSLEKYMTKHIALKHMKVAKIKCFYCGEAFVTEYNRHAHIAKEHSEHVQIYTCEVCGETFDWLRTFTRHMTRKHSTQFYCKICTKSFISSKAFEYHNSIHNGDSYECPVCQRCYSSFNTLKSHVKFSHKNQPKNVKGIFGIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706281;
- 90% Identity
- -
- 80% Identity
- -