Basic Information

Gene Symbol
SMARCC2_1
Assembly
GCA_947859395.1
Location
OX402013.1:2225271-2251757[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.3e-15 5.2e-12 46.1 0.1 3 44 552 593 550 595 0.95

Sequence Information

Coding Sequence
ATGACTGTATTGTTCCAGATGAAAGTATTCATGGACATGAAGCCGGGTGGCTCACTGTGCACCGTGCTAGCTACCATGTTCCGCTTCAAGTCGGAGCAGCGGTGGCGCAAGTTCGACTTCCAGGTCGGTAAGAATCCGTCTCGCAAGGATCTGAACGTACAAATGATGCTTGAAATCGAGTCGTCTCTGCTGAGCGCTGAGCTGATCCGAACACCCTGTGTGTTCATACGTCCGGAGGTGGACAAGGCAACCGCTAATAAAGTGAAGGATATCGTCAGCAACCATCAAGGAGAGATTTGCGAAGACGAAGAAGACGCGACCCACATAGTCTACCCAACCGTGGATCCACTAGAAGAGGAGTACGCCCGGCCGGTGTTACGCCGCGGTAACCACGTGCTAGTGCATTGGTACTACCTGCCTGACAGCCACGACACCTGGGCGCAGGCTGATCTGCCGGTGGATGCACCAGAAACAGTGAACTGGGAGTGCGTCCGTTCGGAGCCGTGGCGTGTGACGGCCACCTGGGCTCTCGACCTGCCTTTGTACAACGAATGGATGAACGAGGAGGATTATGAACTAGACGCCAATGGCAAGAAGAAGATCCACAAACTGCGTCTCTCAGTCGATGACCTGATCCCCGGCGGAGAGAGTTCTAGCAAGGGCAAGAAGGGAAGCAAGAGGAAACGCTCGCCCTCGCCGCCGCCTCAGAAAAACAAGAGGAAGAGCCGCGTCGCAAAACGGCGCGACGAAGCTGAAGACGAGGACGATACCGCGTCCAGAGACAACACCGACAATACCGCGGCGCCCACCCCTGAGGCAGACAAGCCAGCCGAACGTAAGGAACTGATACCGTGTCTATCGATACCCAGGCTCAACCTTAACCAAAGCCTTCTTTTTAAAGCGGCGTCCACCCCCGCTCCGGAATCTACGCCCGCAACGACGCCGGCCCCCGAGGCGCCAAGCACTCCGGCCCCTCAGATGGACACACATGATGACTCGCAAGGGAAGCATAGCGACTCCAATACACAGGAAACCTTAACAAAAGAAGAATTAGAAGACAACGTAACAGACCAGACCCACCACATAGTAGTGCCGTCGTACTCGGCCTGGTTTGACTACAACTCCATTCACACAATAGAGAAGCGAGCGCTGCCGGAATTCTTCAACGGGAAAAACAAGTCTAAGACTCCTGAGATTTATCTTGCATACAGAAACTTCATGATAGACACATATCGCCTGAACCCGACGGAGTACCTCACTAGCACGGCCAGCCGCCGCAACCTTGCCGGCGACGTCTGCGCTATAATGCGGGTCCACGGCTTCCTCGAGCAGTGGGGACTTATCAACTACCAGCTGGACTCGGAGTCTCGTCCCACCGCCATGGGCCCGCCCCCCACCTCCCACTTCCACGTGCTCTCGGACACGCCCTCCGGCCTGCAGCCGCTCATCGCGCGGCCCAGCCAGCCGGGCCAGCCACGCGCAGCGGAGAACGTGCCCAAAGTGGAGCCGGGTCTACCCAACGGCGCTGACCCGGGTGCAGTGCCGCCACTAGCGAGCAACGGCCCCGCGCCAGTGAAGGCAGAGCCGCTCGCCGAGTTTGGAGCCAATCCCGGCCTTAAACTGGACCAATACCGTGGTGGACCACGCGGCCGGGAATGGACAGAGCAAGAGACCCTACTCCTCCTAGAAGCGTTGGAGCTACACCGAGACGACTGGAACCGAGTCGCGGCGCACGTGGGCACGCGCACCCAAGACGAGTGTATACTGCACTTCCTGCGGCTGCCGATCGAAGAGCCATACCTCAACGATCCGGCGTCAGGTGGCGTCCTAGGTCCATTGGCATACCAGCCCATTCCGTTCAGCAAGACTGGCAACCCCGTGATGAGCACTGTGGCTTTCCTGGCCTCGGTCGTTGACCCGCGCATCGCTTCCAAAGCTACTAAGGCTGCTATGGATGAATTCGCAGCCATCAAGGATGAAGTACCGGCAGCCATGATGGAGGCTCACGTGAAGGCAGCGGGCGCGCACGGCCCCACCGCCGCGCTCGAAGCCACCGGTATAGCGGGCACCGCGCCAGAACCTACCGGGGAGAAGAAAGAAGGCAGCGATGTAAAGAGCGAGCCCATGGAAGTAGAAGAAGGCGAGATGAAGGTTAAAGACGAACCATCCGAGGCAGCAGCCGCCGCGCCGCCCGCCGCAGACGAAAAGCAACCTAAGGAGGAATCAACTGAGACGGCAGCGGAAGGCACGGGAACCGTCGACGCCAAACTGCAATCCGCCGCCGCAGCCGCGCTGGCCGCCGCCGCGGTTAAAGCGAAGCATCTCGCGGGCGTCGAGGAACGCAAGATCAAGTCTCTGGTGGCCTTGTTGGTCGAAACGCAGATGAAGAAGCTGGAGATCAAACTCCGGCACTTTGAGGAGTTGGAGGCTACAATGGAGAGGGAACGAGAGGGTCTGGAGTACCAGAGGCAGCAGCTGATCCAGGAGCGCCAGCAGTTCCACCTGGAACAACTGAAGGCAGCAGAGTTCCGCGCGCGGCATCAAGCACATCAGAGAATGCAAGCGGAAGGTGGCGCCGCGCCCGCCACGGAGCAGCCGCCGCCGGAAGCCGCGCCGCCCGTGGCGCCACCTACACACGCGTAG
Protein Sequence
MTVLFQMKVFMDMKPGGSLCTVLATMFRFKSEQRWRKFDFQVGKNPSRKDLNVQMMLEIESSLLSAELIRTPCVFIRPEVDKATANKVKDIVSNHQGEICEDEEDATHIVYPTVDPLEEEYARPVLRRGNHVLVHWYYLPDSHDTWAQADLPVDAPETVNWECVRSEPWRVTATWALDLPLYNEWMNEEDYELDANGKKKIHKLRLSVDDLIPGGESSSKGKKGSKRKRSPSPPPQKNKRKSRVAKRRDEAEDEDDTASRDNTDNTAAPTPEADKPAERKELIPCLSIPRLNLNQSLLFKAASTPAPESTPATTPAPEAPSTPAPQMDTHDDSQGKHSDSNTQETLTKEELEDNVTDQTHHIVVPSYSAWFDYNSIHTIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYLTSTASRRNLAGDVCAIMRVHGFLEQWGLINYQLDSESRPTAMGPPPTSHFHVLSDTPSGLQPLIARPSQPGQPRAAENVPKVEPGLPNGADPGAVPPLASNGPAPVKAEPLAEFGANPGLKLDQYRGGPRGREWTEQETLLLLEALELHRDDWNRVAAHVGTRTQDECILHFLRLPIEEPYLNDPASGGVLGPLAYQPIPFSKTGNPVMSTVAFLASVVDPRIASKATKAAMDEFAAIKDEVPAAMMEAHVKAAGAHGPTAALEATGIAGTAPEPTGEKKEGSDVKSEPMEVEEGEMKVKDEPSEAAAAAPPAADEKQPKEESTETAAEGTGTVDAKLQSAAAAALAAAAVKAKHLAGVEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARHQAHQRMQAEGGAAPATEQPPPEAAPPVAPPTHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00737434;
90% Identity
iTF_00698229;
80% Identity
-