Basic Information

Gene Symbol
ct
Assembly
GCA_947859395.1
Location
OX402014.1:12187402-12205322[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.5e-27 3.6e-23 81.8 0.0 3 70 174 242 172 249 0.94
2 3 1.7e-32 4.1e-28 97.6 0.0 4 77 574 648 572 650 0.96
3 3 2.5e-31 5.9e-27 93.9 0.0 3 75 777 850 775 854 0.95

Sequence Information

Coding Sequence
ATGCTCCGCTCGCTAGACCTGGGCAGCGAGCGCTCCGATCGCTCCGACCGCCTGGATCGTTCAGATCGCTCCGATCGCCTCGATCGGTCCGATCGCCTAGAACGCCTAGATCGCCCCGATCGGCTAGATCGCCCAGATCGGTTAGATCGCCTAGAACGTGAGCGAATCGAGCGCAAGCCTGAACGCTCGCCGAGCGTGGCGCCGAACGAACGAAGCTCTGTCGAGCGCGAACGGAGCGCTGAAAGAAGAGAACCAGGTCCCGAGGAGTGGCCGAGCACGCCTCCGCTCAACAATAACACGACTCACCACAACAACAATGGCCCGACGCCGCTGCCGCTGCCGCCGCCGAGCCCCTTCCGCTTCGACGACCACCGTCCCTACCGCTTCGCTGACGACATGGGGCCCTTACCACCAGGCGCTTTAGTCGGACGACTCGGAGACTCTCTGATCCCCAAAGGAGACCCCATGGAAGCGAGATTGCAAGAGATGCTCCGATACAATATGGATAAATACGCTAACAGCAATCTGGACACGCTGCACATCAGTCGAAGAGTCAGAGAGCTGCTTTCGGTCCATAATATAGGACAGCGACTATTCGCGAAGTACGTCCTTGGGCTGTCTCAAGGGACGGTGTCGGAGCTGCTATCGAAACCGAAGCCCTGGGACAAGCTGACCGAGAAGGGACGAGATTCTTACAGGAAGATGCACGCGTGGGCTTGCGACGAGGCCGCGGTGATGCTACTCAAATCTTTGATCCCTAAGAAAGTTGGTTCGAAGGATGGCAGCATTGGTCCTGGTGGTTTCGGAAGGTCTGACGGCGAGGGGGACGACAGACTGGCACACATCCTCAGCGAGGCTTCTCATATGATGAAGACGCCCTCGGGAGTGCCGATCAACGATGATTCTAGAAGCAATGAAGACTCCAGTTCGCCTAGAACGCAGTGTCTTTCACCTTTCTCTAAGGACTCGAGCCAAAACCGAAGGCTGAAGAAGTATGAGAACGATGACATTCCTCAGGAGAAAGTGGTTAGGATCTACCATGAGGAGCTAGCCAAGATCATGACCAGGCGGGTCGAGGATATCCGCCACAACCGAGAGGGTTTCCCTGGTATGTTTCCCCCTTTTTTCAGCGGTGGCATGCCCCCCCACATGGAACGGCCCCCCGAAGACATCCGCATGGCTTTAGAAGCGTACCACAGAGAACTGGCCAAGATCCAACCTGGAGGAAACATCCCCAATCTCCACAACCTCCCTGGAATGCCACCTTTCCCGAACCTCCTGGCTCTACAGCAGCAGGCCATGCAACAAGCACAGAACCAACACATCAACGGTGGAGCTGTCCAAGATCTCTCACTCCCAAAGGATAAGAACGCCAAAATAAACGGAATGACTGATAGCGATAAGGAAAGATCTATGGATGCTGAAGAGGCGATCCGACACGCTGGCAGCGCGTTCTCCCTGGTCCGACCCAAGCTGGAGCCTGGCCAGTCTACGGGGTCCTCCGCTTCAAGTCCCCTAGGAAACGCGATTCTACCACCAGCGATAACCCCTAACGATGATTTTAACACTTCAGCGGCCGCCAGTCCGCTTCAACGCATGGCTTCTATAACCAACAGCCTGATCTCTCAACCAAACAACCCTCCCCACCACACACCAGCTCAACGATCAATGAAAGCAGTTCTACCACCAATCACACAACAGCAGTTTGACCTCTTCAACAACTTGAATACTGAAGACATCGTCCGAAGAGTGAAAGAGGCTTTGAGCCAGTACTCGATCAGTCAAAGATTGTTCGGGGAGTCTGTGCTTGGGCTGTCGCAAGGGTCGGTCAGTGACCTCCTGGCGCGGCCGAAGCCCTGGCACATGCTGACGCAGAAGGGCCGGGAGCCTTTCATCCGGATGAAGATGTTTCTGGAAGATGACAACGCAGTGCACAAGCTGGTCGCCAGCCAGTACAAGATCGCGCCGGAGAAGCTTATGAGGACTGGAAACTACAGCGGAGCACCGATATGTCCGCCAAACATGAACAAACCAATGCCTCCAACGCAGAAGATGATCTCAGACGCTACATCTTTGCTCAGTAAGATGCAGCAGGAACAGTTATTAGGACCTGGCCACCTGGGGCACCTCGGGCAGCCTCCCCCACTACTGCTGACACCCCCCGGCTTTCCCCCACACCATGCGGTCACCCTTCCTCCTCAACACCACGACAACAACAACAAGGAAAGGAAACCACCACCGCCACCACAGCCGCACCATCATCCACCAATCATGCGCAGTCTCCACCAACACATATCCCCCAGTGTCTACGAAATGGCAGCACTAACGCAAGACCTCGACACGCAAACGATCACCACAAAAATCAAGGAAGCCCTACTTGCGAACAACATCGGCCAGAAAATCTTCGGAGAAGCTGTCCTTGGCCTCTCCCAAGGATCTGTCAGCGAGCTACTATCCAAGCCCAAACCCTGGCACATGCTGAGCATCAAAGGTAGAGAGCCGTTCATCAGAATGCAGCTGTGGCTCAGCGACGCTCACAACATCGACCGTCTGCAAGCCTTAAAGAACGAGCGACGGGAGGCCAACAAGAGACGTCGCTCCAGCGGCCCCGGGCAAGACAACTCTTCTGACACTTCATCTAATGACACGTCGGAATTCTACCACTCCAGCTCTCCTGGACCGACCACGGGGGCCCCCTGCGCTAAGAAGCAACGAGTTCTGTTCTCCGAAGAACAGAAGGAGGCTCTGAGACTTGCGTTCGCTCTCGACCCCTACCCTAACATGCCGACAATAGAATTCCTTGCCTCAGAACTAGGGTTATCGACGCGGACGATAACCAATTGGTTCCACAACCACAGAATGCGATTAAAGCAGCAAGCGCCGCATGGTCTCCCAGCGGAACCGCCGGCGAGAGACCAGTCTTCCGCTCCATTTGACCCGGTCCAGTTCCGTTTACTCCTCAACCAGAGATTGCTGGAACTGCAGAAGGAAAGAATGGGCTTGGCGGGAGTACCGCTTCCGTACCCGCCGTACTTTGCCGCTAACTCCAATCTAGCTGCTTTGATCGGTCGGGGTTTAATACCTCCAGAAGACGCGGTAAAAGACCAGAGCGGTGGCCTCGATTTATCCATGCCGTTGAAACGAGAACCAGACGGAGAGGATTACGAAGATGACGATGTGGAAAGCAACCTCGGGTCGGATGACTCGTTGGACGATGAGTCAAAGACTGAGCCGAAAGCGGCGTCGACACCGACCGCCCGCTCCAGTAGACGGAAACCAGCCGCGCCTCAATGGGTCAACCCTGACTGGCAGGAGGACAAGCCGAGAAACCCTGACGAGGTCATCATCAACGGAGTCTGCGTGATGAGAAGCGATGACTTCAGGCGAGAGTCTGAGGAGACGGTTCGTATCGAACCCTCACCGGTCCCCAGGGAGGGGTCCCCCCTTCCTCCAAGGACCCCTCAAACCCCGCAGACCCCGCGGCCACCGCACACCCCCGATGACGTCATTCCGGAGGACAAGATAAAGTCTGAGACGGATGAGGATCGGTGGGAGTACTGA
Protein Sequence
MLRSLDLGSERSDRSDRLDRSDRSDRLDRSDRLERLDRPDRLDRPDRLDRLERERIERKPERSPSVAPNERSSVERERSAERREPGPEEWPSTPPLNNNTTHHNNNGPTPLPLPPPSPFRFDDHRPYRFADDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNMDKYANSNLDTLHISRRVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEAAVMLLKSLIPKKVGSKDGSIGPGGFGRSDGEGDDRLAHILSEASHMMKTPSGVPINDDSRSNEDSSSPRTQCLSPFSKDSSQNRRLKKYENDDIPQEKVVRIYHEELAKIMTRRVEDIRHNREGFPGMFPPFFSGGMPPHMERPPEDIRMALEAYHRELAKIQPGGNIPNLHNLPGMPPFPNLLALQQQAMQQAQNQHINGGAVQDLSLPKDKNAKINGMTDSDKERSMDAEEAIRHAGSAFSLVRPKLEPGQSTGSSASSPLGNAILPPAITPNDDFNTSAAASPLQRMASITNSLISQPNNPPHHTPAQRSMKAVLPPITQQQFDLFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGNYSGAPICPPNMNKPMPPTQKMISDATSLLSKMQQEQLLGPGHLGHLGQPPPLLLTPPGFPPHHAVTLPPQHHDNNNKERKPPPPPQPHHHPPIMRSLHQHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNIDRLQALKNERREANKRRRSSGPGQDNSSDTSSNDTSEFYHSSSPGPTTGAPCAKKQRVLFSEEQKEALRLAFALDPYPNMPTIEFLASELGLSTRTITNWFHNHRMRLKQQAPHGLPAEPPARDQSSAPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANSNLAALIGRGLIPPEDAVKDQSGGLDLSMPLKREPDGEDYEDDDVESNLGSDDSLDDESKTEPKAASTPTARSSRRKPAAPQWVNPDWQEDKPRNPDEVIINGVCVMRSDDFRRESEETVRIEPSPVPREGSPLPPRTPQTPQTPRPPHTPDDVIPEDKIKSETDEDRWEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01338275;
90% Identity
iTF_00700898;
80% Identity
iTF_00699989;