Eexi000303.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352254.1:5497838-5502580[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00085 0.054 14.2 5.4 2 23 87 108 86 108 0.96 2 12 0.0024 0.16 12.8 3.6 1 23 114 137 114 137 0.96 3 12 0.00036 0.023 15.4 3.0 1 23 152 174 152 174 0.98 4 12 0.00042 0.027 15.2 2.5 1 23 183 205 183 205 0.99 5 12 0.41 26 5.8 2.6 1 23 213 236 213 236 0.93 6 12 0.3 19 6.2 0.5 2 21 245 264 244 265 0.93 7 12 2.5 1.6e+02 3.3 5.5 3 23 274 294 272 294 0.95 8 12 6 3.8e+02 2.1 4.1 1 23 417 439 417 440 0.93 9 12 6 3.8e+02 2.1 3.4 2 23 476 497 475 497 0.96 10 12 0.32 21 6.1 3.7 1 22 500 521 500 523 0.89 11 12 0.00011 0.0071 17.0 0.5 2 23 529 550 528 550 0.97 12 12 0.00099 0.063 14.0 1.1 1 23 556 579 556 579 0.97
Sequence Information
- Coding Sequence
- ATGTCTGAAGATAAGCCCGATGTGCCGCCGGACAGCCAACCTGTCGCTGGCCCGGCCAATTATGGGGATATTGACAATATGAACCAATTCGCGAGTGTATGGGTAAAAGTTGAAGTAATGGAAGATGATGATGACGATGATGATGATGATGATAATAACGTTAATACTAAAAGTGAACCAAAAATTGAGGAAAATGCAGAACCACCGATGAAAAAAGAAAAAACACCCAAACGACGTTCACCTAAACCTAGAAACTTGAAATGTAGTGAATGTGATTACCGCTGTGCAAGGCAACACACACTCAACACACACATGTTCTCCCACTCGGCTACTAAGCCCTATACGTGCACCCACTGTAACTACTCGACAATATACCGATTATCCCTAAAAAGGCATATATTCGTACAACACGAATGCAAAGAATCTGAAACAGCCAGGAGTAGCCTGCCGACATATAACTGCTCTATATGCAAATATACTACAAATTTCAAATGGAACCTTAGCTCTCACCAAAGAAAGCATGAATTAGCTAGATTAGCTAAGCAATATCAATGTCCTTCCTGTGATTTCAGTACACCATATAAATATAATTTCGAGAAGCATAACCGGAAGCACTTGTCTGAGTCAGGTTCAAATTACTGCTGTGATAAATGCCCGTTTACTACAAAATTTGAAGGTCATATTGTCCGTCATCTAGCCCAAGTACATTTTGAAATATCTGAGAAAGCCAGTCGGTGTGATTATTGTTCATTCGCTACCAAAGTTAAGTGGAGACTCAATAAACATGTAAACAGGAGCCGAGAAGAGAAACCGATTTGCTGTTCAATATGCAATTTTCAAACAAACTATCGCTGCGCTTTGAGACAACATAAACTTTCCCACACTGATATTCAGCATAACAAACGCTTACTTGATAATATATTCACAACAGATGCAAATACAGAGTTACACAACGTCAAACTACCTAAAGAGCGTGCGTTTGAAGCAATAGAAACCTGTGAGATGCAGTCTAAAGAGGCAGAACCTGGGACAATGACAGAAACTCCAAAAGATTTTGAAGATCTCAAAGAAAAATTGTTAAACGATTCATACTACACGTACAACGATAACCCTCAAGACTTTGAAGTCAACTATAGTCAATTAGTCGAGACTGAACATGAACGAAACAACCAGTACCTACTGGATCCGACTTGTGAAGTCGAATGGGCCACTATTCGAGTTATAGAATCTCCGGACCAAGACCGACCGTTCCAGTGTATAACGTGCTCGTACAAAGCTAAGTTCAAAGCATCTGTTCAAAGACACTACCAGCGTCACCATACCAGCCACATTCGACCATACAAATGCATAAATTGTGACTTCTGCACTAAAACAAAGGATGCAATTTCTCTGCACAACAAACGAAGCAAATCTATCTTCCTTTTAAGCTGCAAATTATGTTCCTTCTCTACCATATTTAAGTGTCAATATGCAATGCACGAAAAATCTCACATGGCTTTTAAATGTGTCTATTGTGACTACGCTTGTAGGAAAAAACAGGATATATACAAGCATTTTACTGAAGTACACATAGAAAATAAGCTTAAATGTAGTTACTGTGACTACAAGGCGACAAGAAAAGATAGTCTTTTAGTTCATCAAGCAACACACACAGGCAAGAAGCCGTTCCAATGCAAACTTTGCTCGTACACTTCTGTCAGAAGAAATCTACTTGAGAACCATATTATACGGTTTCATTCGAGCCAGAAAGAAGAGACGATTTTGGATGACGATAAAATTGAGTCTCTAAGAAAACCTGTAATAGGAAAAATGGAATCAGATTTGAATTATTCTAGCTAG
- Protein Sequence
- MSEDKPDVPPDSQPVAGPANYGDIDNMNQFASVWVKVEVMEDDDDDDDDDDNNVNTKSEPKIEENAEPPMKKEKTPKRRSPKPRNLKCSECDYRCARQHTLNTHMFSHSATKPYTCTHCNYSTIYRLSLKRHIFVQHECKESETARSSLPTYNCSICKYTTNFKWNLSSHQRKHELARLAKQYQCPSCDFSTPYKYNFEKHNRKHLSESGSNYCCDKCPFTTKFEGHIVRHLAQVHFEISEKASRCDYCSFATKVKWRLNKHVNRSREEKPICCSICNFQTNYRCALRQHKLSHTDIQHNKRLLDNIFTTDANTELHNVKLPKERAFEAIETCEMQSKEAEPGTMTETPKDFEDLKEKLLNDSYYTYNDNPQDFEVNYSQLVETEHERNNQYLLDPTCEVEWATIRVIESPDQDRPFQCITCSYKAKFKASVQRHYQRHHTSHIRPYKCINCDFCTKTKDAISLHNKRSKSIFLLSCKLCSFSTIFKCQYAMHEKSHMAFKCVYCDYACRKKQDIYKHFTEVHIENKLKCSYCDYKATRKDSLLVHQATHTGKKPFQCKLCSYTSVRRNLLENHIIRFHSSQKEETILDDDKIESLRKPVIGKMESDLNYSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706535;
- 90% Identity
- iTF_00706535;
- 80% Identity
- -