Eexi000506.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352255.1:1412647-1428751[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.14 9.1 7.2 1.3 2 23 384 406 383 406 0.95 2 14 3.2 2.1e+02 3.0 0.4 1 23 410 432 410 432 0.95 3 14 5.8 3.7e+02 2.2 4.9 5 23 440 459 437 459 0.94 4 14 0.058 3.7 8.5 0.6 1 23 465 488 465 488 0.95 5 14 0.027 1.7 9.5 0.1 3 23 503 524 502 524 0.95 6 14 0.027 1.7 9.5 0.1 3 23 537 558 536 558 0.95 7 14 0.027 1.7 9.5 0.1 3 23 571 592 570 592 0.95 8 14 0.023 1.5 9.7 0.0 3 23 605 626 604 626 0.95 9 14 0.00013 0.0082 16.8 0.2 3 23 638 659 636 659 0.95 10 14 0.97 62 4.6 0.2 1 23 688 711 688 711 0.90 11 14 0.0013 0.084 13.6 1.2 1 23 725 747 725 747 0.97 12 14 0.22 14 6.6 0.0 3 23 755 775 753 775 0.90 13 14 0.0055 0.35 11.7 2.9 3 23 781 801 779 801 0.97 14 14 0.026 1.6 9.6 0.0 1 23 807 830 807 830 0.94
Sequence Information
- Coding Sequence
- ATGCCCTACTGTGCAATTTTATCCTGCAAGAATGCGAGCCACACTAAGAACCTTAGCAACGGTGGCATATCTTATCATCGATTCCCTAAAACTGAAAACGAGAAATCACAATGGATTAATGCAACTGGCAGGCGAGACTGGTTACCGGCTAAAAGCAGCACCATCTGTTCGAAACACTTCAAAGAGGCTGACTTTGTGATCGGCAAGGGAGGGTATAAATACTTGATTGAGACTGCTAAACCCATGAAGACTATGTTATCAACACAAACCTCAACAGCCGATGTAGACAATGAAATAAATACATCATCAGTTAAGAGGCTTCAAGCCATGCTGCGCTTCAAGCAATGTAAGGTTGACAAACAACGGGTGAAGATCAAATCACTGCAGACTCAAGTACGAAGGTTGACAAGAAGGTTGGAGAGTTTGAAAGAAAACTGCAGTTGTGGTGCTACGACCTTTATAAAGAAAGGTAAAGATAAGAGTAAAACAAAACAAGTACAAGATGATACCAGTATAGAAAAAATCAGTTTAGAACATGTCAAAGTAGAATCAATAATTATATCGGAAAAACATGAAAATAATAAATTAGAAACTAATCTACAATTAAAAGACGAAGAAAATGATACACAAAATTATAATTCAAATGATATTTTCAATGATAATGAATCGACCACTGATATTTCTGATGATATATCATCAGATGATGATGATTTAGATTTAGAGAGTTTAAGAAACAAGACTGCAACTAAGAAATCGAAAAAGCCTACGAAATCAAAAAGTAAACGAGAAGATATACAGAATAACGATATGATCGTGCCAACTAAGAAAGGGTTTATAGATTACACACAATATGAGGAAGTATTTGACATACAGTTATTTAGAACTGATGAAGATGCGAGAAGGGAACTACAAGCGCGGCGCGACTCGGAGCCCTATACATCTGCCAAGCACCGCTGTGAGCGTTGCTACACGGTCTACAAGTGCGAGAAACTGCTGCAGTTCCACATGAAGTGGCATGATACTCGGAGCCCTGGTGCTTGGCAGACGTATATGTCTGCCAAGCACCGCTGTGAGCGCTGCTACACGGTCTACAAGTGTGCGAAACTGCTCCAGTTCCACATGAAGTGGCATGATTCGACAGCAGAAGTCGAATGCGATATATGTCGCATGCGATTCGCCAACAAGCGGGTGCTGCTTGGCCACAAGATGCGATGTCACCGCGGCAAGTTCACGTGCAGGCTCTGTCCGCTCATCACTTACTACGGGTCAGCTATGAAGGCGCACTTTGAAAAACATCAAGGGAAGACATATAAATGTCACTGCGGAGGAGAATTCAAGCACATCTCATCGTACCTAACGCACAAACGCAAGACGCACGCACGCACGTCGACGCACGTCTGCGTCACGTGCGCGCGTTCTTTCGTCTCCCGGCTCGGACTGCTCAACCACCGATCTAGGGCACACCAGACTCGTTCGTTAGAGGACTCCGCAGCCGGTGGCGTGGCGTGCTCTCTGTGTGAGCTCACGTTCCCGAACCAACGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTCAGCCAGGCTGCCAACGACATCGGCGTGGCGTGCTCTCTGTGTGAGCTCACGTTCCCGAACCAACGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTCAGCCAGGCTGCCAACGACATCGGCGTGGCGTGCTCTCTGTGTGAGCTCACGTTCCCGAACCAACGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTCAGCCAGGCTGCCAACGACATCGGCGTGGCGTGCTCTCTGTGTGAGCTCACGTTCCCGAACCAAGGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTCAGCCAGGCTGCCAACGACATCATCGCTTGCCGGTACTGCGGTCTGACCTTCGACGACGCAACACAACTTAAACAACACAAGCGAGAGGAACATCCGACGCCGCCGAGAGATAGATACGCGGAGGCCAAACGTAGCAGCGGGCATAAAATACCGGCTGCTAGCACGCAAGACTGTTGCTATACTTGTGATGAGTGCGGAGCGGAGGGCAAAGGGCGTATGTGGCGGCTCCAACACTACAGAAAAGAACATCCACAGATAAAGTACAAGGCGAGCGAAGACGCGGTGCAGCACATGTGCGATCAGTGCGGGAGACTGTTCAGTAGCATATACGTCCTCCGCGACCACCTGAACACCCACCTGGGGCTCCGCCCCTGGGCTTGCCGCGGCTGTCCTCGCGCCTTCAGCTCCTACGGGGCGCGCGCGCAGCATGAGGTCCGCCATGGGGCTCCGCTGGCCTGTCCTTATTGCCCCGCGCGGTTCCATAGCACATCGGGGCTCTGTATGCATAAACGGAGGCACGTAGGCGCGCGCACGCACGTGTGTGGTGTGTGCGGGCGCGCCTTTCTGCTGGCGGCGCAGCTGCGCGAGCACGTGCGCGCCGTGCACCAGCACCGCCGCCGCCGCCAGCCGCCGCGGGACCGCCGCGCCGCGCCGAGATACCATAAGCCGGTCGTTACCAGGATACAACTGTAA
- Protein Sequence
- MPYCAILSCKNASHTKNLSNGGISYHRFPKTENEKSQWINATGRRDWLPAKSSTICSKHFKEADFVIGKGGYKYLIETAKPMKTMLSTQTSTADVDNEINTSSVKRLQAMLRFKQCKVDKQRVKIKSLQTQVRRLTRRLESLKENCSCGATTFIKKGKDKSKTKQVQDDTSIEKISLEHVKVESIIISEKHENNKLETNLQLKDEENDTQNYNSNDIFNDNESTTDISDDISSDDDDLDLESLRNKTATKKSKKPTKSKSKREDIQNNDMIVPTKKGFIDYTQYEEVFDIQLFRTDEDARRELQARRDSEPYTSAKHRCERCYTVYKCEKLLQFHMKWHDTRSPGAWQTYMSAKHRCERCYTVYKCAKLLQFHMKWHDSTAEVECDICRMRFANKRVLLGHKMRCHRGKFTCRLCPLITYYGSAMKAHFEKHQGKTYKCHCGGEFKHISSYLTHKRKTHARTSTHVCVTCARSFVSRLGLLNHRSRAHQTRSLEDSAAGGVACSLCELTFPNQRVLNVHVLSTHKLSQAANDIGVACSLCELTFPNQRVLNVHVLSTHKLSQAANDIGVACSLCELTFPNQRVLNVHVLSTHKLSQAANDIGVACSLCELTFPNQGVLNVHVLSTHKLSQAANDIIACRYCGLTFDDATQLKQHKREEHPTPPRDRYAEAKRSSGHKIPAASTQDCCYTCDECGAEGKGRMWRLQHYRKEHPQIKYKASEDAVQHMCDQCGRLFSSIYVLRDHLNTHLGLRPWACRGCPRAFSSYGARAQHEVRHGAPLACPYCPARFHSTSGLCMHKRRHVGARTHVCGVCGRAFLLAAQLREHVRAVHQHRRRRQPPRDRRAAPRYHKPVVTRIQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00699244;
- 90% Identity
- iTF_00699244;
- 80% Identity
- iTF_00699244;