Basic Information

Insect: Eupithecia exiguata
Gene Symbol: ush
Assembly: GCA_947086465.1
Location: OX352229.1:1614109-1617003[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0071 0.45 11.3 0.2 1 20 96 115 96 117 0.94

2 9 2.9e-05 0.0018 18.9 1.6 1 23 152 174 152 174 0.99

3 9 0.023 1.5 9.7 1.2 2 20 204 222 204 224 0.93

4 9 0.02 1.3 9.9 4.1 2 21 465 484 464 485 0.95

5 9 0.0059 0.37 11.6 0.2 3 20 513 530 511 532 0.90

6 9 1.7 1.1e+02 3.8 0.0 2 23 565 586 564 586 0.93

7 9 0.0038 0.24 12.2 1.2 1 23 592 614 592 614 0.99

8 9 0.071 4.6 8.2 2.5 1 23 653 676 653 676 0.96

9 9 0.059 3.7 8.4 0.8 2 20 713 731 713 733 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0071	0.45	11.3	0.2	1	20	96	115	96	117	0.94
2	9	2.9e-05	0.0018	18.9	1.6	1	23	152	174	152	174	0.99
3	9	0.023	1.5	9.7	1.2	2	20	204	222	204	224	0.93
4	9	0.02	1.3	9.9	4.1	2	21	465	484	464	485	0.95
5	9	0.0059	0.37	11.6	0.2	3	20	513	530	511	532	0.90
6	9	1.7	1.1e+02	3.8	0.0	2	23	565	586	564	586	0.93
7	9	0.0038	0.24	12.2	1.2	1	23	592	614	592	614	0.99
8	9	0.071	4.6	8.2	2.5	1	23	653	676	653	676	0.96
9	9	0.059	3.7	8.4	0.8	2	20	713	731	713	733	0.92

Sequence Information

Coding Sequence: ATGCCGGGAGAACCTCGTACGCCGAGCTCGGGCGCCGCGTCGCCGGCGTCCGGCGCCTCGCCCGCCGCGTCCGCGACCGCGTCGCCACCGCGTCTGCGCCTTAACACTAGCCTAGCCACCGACCCAGCGCTTGCTCCAACAGCGACGGTTCTGAAGCGAGAGCCACCGTCGCCGTCACCGCCGCCCGCGCCGCCCGTAGCCTGTAACACTCCCCAGCCAAGGGATTACCTTGCCGTCGCAGCTGCGGCTTTCCCGGGTTTGTTCCCTGCGGCCGGTCCGCCTGGCTACATCTGCAAGCCGTGCGGTATCCGCTACTCTTCTCTCAGCACGCTACAAGCGCACCAGGAGCACTATTGTTCAAATCGCCGGCCGAAAGAAGGCACCGACTCCCCGGCCGATGCCGCCGACGAGTCCAGCGGAGACTCGAAGACACCACGTCCGCCTAACAAGCAGTACCAGTGCACGTACTGCTCCTACAGCGCGGATAAGAAAGTCAGCTTGAACCGGCACATGCGCATGCACTCGTCTTCGCCCGTCAGCAGCGGCACGCCGGCGCCCGCGCCGACTTCCAACGGCGAGACGGCGGACAGTCCGCCGGCACCGGATCGCTACTGCACGGACTGCGACATCCGCTTTAGCTCAATAAAAACTTTCCGCGCGCATAAAACACACTACTGCAGTACGAGGCAGGTGGTCAAGAACACGCCGGCCGTCACGAGAGGAAGCTCAGCGTCAGGTTCCGCGCCGCCATCACCGGGCCCCACCCCGCCCGCTGCGAGTGGATATGCCCTAGCGCTACCCACGACACCGATCCTGATATTACCGATAGGGCTGCTCAGCAAAGCCAGCACGCTCCCTGGCACCACGCTACCCGATCCGGACACTCCCTGCTTTCTCCTACCTAACGGAACGTTTCAACCCTTCAGCCACGCGCTGCCGAATTTACCCACCGATGGGAAAGCAGCTGAGGTGCTCAAATCTGCGAACAGGCCTCGAGAAAACTCTAGAGATGGCGGGCAGACGCCGTTGGATCTAAGTATGAGGCGAACCCCAGAATCTGTGACGATAGATGAACATGAGAAAGAGAATAGGATGAGATCGACGACCCCGGAGCAGATAGTATGCGCGCCGTCACTTCCCGGGTCACCTGGGACACCGTCGCCTTCTCCACGACGATCGTCTTCCCCTAGCGGAGAGAGCTCGCCAAAACGACGACGACGAAATAGCTCCCGAGGGCCAACTCCGAAACCGCCCAGCGTACCCTCGCCACCCGAAGAGAAGTTCAACCCCGGCCCGCCTGTGCTTCTCCCCCCCGGCCTAGCGATGCGTCTCGCAGCAGAACTACCCGTAACCGGCGTGTCTCCCCAAATGCTGGTAAAGCAGGGCGTATCCAAATGCAAAGAGTGCAACATAGTCTTCTGCAAGTACGAGAACTACAAAATCCATAAAAGGCACTACTGTTCAGCCGGGGGAGGCGAGGACCGGTCGAGCCCCGCGCCGGAACCCGGTCCACCGCAGCAGTACCGGCAACTGATCTGCCTAGCTTGCGGGATCCACTTCAGTTCGCTGGATAATCTGACAACGCATCAGAGTTACTACTGCACGAAGAGGGAGACGCGTTCTCCGCGCGCCGCCATTGCCGCAACTCCTGTCATCGAAGCTAGAGTGACAACTGGGACTGAAGGGGGCTGGAAGTGTCCTTGTTGCGACGTGGTGTCTCCCACGGCAGCGGCGGCGCAGCGGCATATGGACGCCCATCAGGGCGTGAAGGCCTTCCGCTGCACTATATGCCAGTACCGCGGGAACACGCTCCGGGGAATGAGGACCCATATACGCATGCACTTCAATAATAAGAAGCCCGTTGAAATGCAGGAAGAAAGCTACATAGCCTGCGTGCTAGAAGACGACAACCGAGAGGCCACGTCCCCCAGCCCGGCAGCGACCGGCGAACGCATCCACCGCTGCAGCCACTGCGCATACACATCCACCTACCGAGGCAACGTCGTCCGCCACGCGCGACTCGTCCACGCCACCGACGAACCAGAGGAGGAACGCCCCGACCCATCACCCCCTGTAGTACCCCTCACAGTCGTCGAGATAAAAAAAGAACCAGGCACGGAGGAAGAAACCCCTAACTACTGCAAAACCTGCGACATATCCTTCAAATACGTGAATACGTATAAAGCTCATAAGCAGTTTTATTGTAAAGCGACACAGGATGCTGTGGCTAATAACAATGTGCCGGCGCCTAGGGTGAGCGATGCGGCAGTGCTATAG
Protein Sequence: MPGEPRTPSSGAASPASGASPAASATASPPRLRLNTSLATDPALAPTATVLKREPPSPSPPPAPPVACNTPQPRDYLAVAAAAFPGLFPAAGPPGYICKPCGIRYSSLSTLQAHQEHYCSNRRPKEGTDSPADAADESSGDSKTPRPPNKQYQCTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPAPTSNGETADSPPAPDRYCTDCDIRFSSIKTFRAHKTHYCSTRQVVKNTPAVTRGSSASGSAPPSPGPTPPAASGYALALPTTPILILPIGLLSKASTLPGTTLPDPDTPCFLLPNGTFQPFSHALPNLPTDGKAAEVLKSANRPRENSRDGGQTPLDLSMRRTPESVTIDEHEKENRMRSTTPEQIVCAPSLPGSPGTPSPSPRRSSSPSGESSPKRRRRNSSRGPTPKPPSVPSPPEEKFNPGPPVLLPPGLAMRLAAELPVTGVSPQMLVKQGVSKCKECNIVFCKYENYKIHKRHYCSAGGGEDRSSPAPEPGPPQQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRAAIAATPVIEARVTTGTEGGWKCPCCDVVSPTAAAAQRHMDAHQGVKAFRCTICQYRGNTLRGMRTHIRMHFNNKKPVEMQEESYIACVLEDDNREATSPSPAATGERIHRCSHCAYTSTYRGNVVRHARLVHATDEPEEERPDPSPPVVPLTVVEIKKEPGTEEETPNYCKTCDISFKYVNTYKAHKQFYCKATQDAVANNNVPAPRVSDAAVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00662644;
90% Identity: iTF_00663582;
80% Identity: -