Basic Information

Insect: Eupithecia exiguata
Gene Symbol: RPH1
Assembly: GCA_947086465.1
Location: OX352249.1:1495493-1508886[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00056 0.036 14.8 2.4 1 23 390 413 390 413 0.94

2 10 0.042 2.7 8.9 5.5 2 23 419 440 418 440 0.98

3 10 0.018 1.1 10.1 7.0 1 23 471 494 471 494 0.97

4 10 0.00038 0.024 15.3 0.3 1 23 498 521 498 521 0.95

5 10 0.016 0.99 10.3 0.1 2 20 536 554 535 556 0.92

6 10 0.0029 0.19 12.5 6.0 1 23 582 605 582 605 0.96

7 10 0.67 43 5.1 0.4 2 23 655 675 654 675 0.89

8 10 0.22 14 6.7 2.0 1 23 681 703 681 703 0.90

9 10 0.00022 0.014 16.1 0.1 3 23 711 732 710 732 0.98

10 10 0.74 47 5.0 0.1 3 23 747 768 746 768 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00056	0.036	14.8	2.4	1	23	390	413	390	413	0.94
2	10	0.042	2.7	8.9	5.5	2	23	419	440	418	440	0.98
3	10	0.018	1.1	10.1	7.0	1	23	471	494	471	494	0.97
4	10	0.00038	0.024	15.3	0.3	1	23	498	521	498	521	0.95
5	10	0.016	0.99	10.3	0.1	2	20	536	554	535	556	0.92
6	10	0.0029	0.19	12.5	6.0	1	23	582	605	582	605	0.96
7	10	0.67	43	5.1	0.4	2	23	655	675	654	675	0.89
8	10	0.22	14	6.7	2.0	1	23	681	703	681	703	0.90
9	10	0.00022	0.014	16.1	0.1	3	23	711	732	710	732	0.98
10	10	0.74	47	5.0	0.1	3	23	747	768	746	768	0.96

Sequence Information

Coding Sequence: ATGTCTGAATTAAAACTATGCCGAATATGTCTCAATAAAGATCGAAAGTTATTCAAAATAGGGCAGTGCAACTTGAAACAGTACTACGAGGAAATAACTCAGAACCAGGTATTGACTAACGATGATATTCCCCAATATTTTTGCTTCGAGTGCGCTGCATTACTTCACAAGTTCCATAAATTCAAAGAAAAATGTGAATATGGACGGTACACCCTGAAAAACCTGAGTTCTAAGGGATATATGACCTACCATGTAATCGACGACATACGCAAGAACCGCACTGATCTCCTACAATCATCAGACTACATCAACCAAGAAGGTCAAAAGCGAATCAAAACTGTCACTGTAAAATACAAAACTGAAAAAGAGCCACTTGAAATGGAAAATGTAACTCTAAACTCCCTGGACACTGATGATGATGATGTTAAGTTTGAGTTCATACCGGAGTCAGACCATGAGGAATTCAGCAGTAACATCAAATCTGAAGATGAACAAAGTCAAAATGTCACTAAAACAGACTCAGTTTTTACTGATTTGGACACAAAACCATATGCTGTTCCATGTCCAACTATTGATACCTCTGAATCTGTACCACCTACTGAATTCAACCCTGATCTTACTGAAAACAACACTATTCCTACAAAAACAGAAACATCAAGTACTAATATAATTGAAAATGACCCCAAAAACAATATCCACATGAACTCACTATATGAATCCGATGATAATAGATTGAATGATGATAATTATGATACAGATTTAGAATCTAAAACAAAGCTAACAAATAAGGATTCGAGAAACCTCAAAAAAAGTAAAAGACCAACCAGAAATTCAACTAGAAACAATAAAAACATATTCCAACCTGAAAACTACTACTCAAATTCCAGTGACGCTAACTTTGAATTAGATCTAGATATAACACACGAAGAATCAGACAATGAAGATATCAAGTCAAAAAAAGGTAGAAGAACTACTAGAAAAACAGCTAAAAATAAGCTCAAAACAGATTTAAAAGATAAGGATTCCGATCACAAGTTTGTAGGTATTATCCGTCAACCAAAAGATGAACTCAGTGAAGGTAATTGGGAAACAAAGTTATTGACAGACGAAGAAGCTATGGATCAGTTTAAGAAAAAAGAATTTGACTCAAGATATGAACGGATGGAGTTTAAATGTACAAAGTGTTTCAAAGGTTTTTCTAAGAATGAGATGTTGCTGAGGCATAATAAGTTGTGGCATGATCATGGGGACAACCAGTGCCGTTTCTGCCACATGCAGTTTAAGTGGAAAAGCAAGCTGCAGCTTCACATGAGGAAGCATTATTACATCTACAAGTGTTTACGATGTGGACTTGAGTTCTTCGTCAAGACTGGTGCGGTGTTCCACGATGAGCATCACAACGGAGTAACTCACACTTGTCGGCACTGCGGCGAGGAATACACTCACATATCAACATACTACACCCATCTGCGCACGTCGCATCGCAACGCCCACGCGTGCACTCTCTGCGGAGAGACCTTCGTGAGTAACGCCGGTGTCGTCGTGCATATGAAGAGGAAACACGTCATGCATGTTGGTAACACTGCGGAGCCATCAACCAACATCTACTGCCAGAAATGCAAGATCTCATTTGTGTCTCAGAGCGCGTACGACACGCACTTGGCCGTGTCAGAGTTGCACGAGGAAGAAACTAAAGACATCAAACAACCGAAAAGAAAACGAAGAGAGATCATTGCGAACGCGCACAGATGTCATCATTGCGACAAAAAATTCAACAGCGGTCGACAAGTTAGAGCACACATACAACAGGAGCACCCCGGTCAGAGAAAGGTGGAGCGCGTTGTATGTGAGATTTGCGGGGCCGTGCTGTCGTGCAGTAAGATGTTCAAGGGAGTAGCAGCGAAGTTGCTAAGGGAGCATGTGGACAGAGTTCATCCCGGACAGAGGAAGGTTGAGAGGCTTGTGTGTTCCATTTGTGGAGAAATGGTCTCGACGACCTACATCCACATCCATATGAACCGCCACACCCGGAATAAGATCTTCCGATGTGAAACTTGCGGGAAAGAGTTTCTATGCGCCAACTCGCTCACTGTTCATAAAATGTCTCACAGCGGCGAGCGTCCGCACGGCTGCCCGATCTGCCCCAAGCGGTTCAGTCTGAAGGCTCAGATGGAGGTGCATTACAAGCGGGTGCATCTGAAGGAACCCTACCCTAAGAGCGGTGAGCGTCCGCACGGCTGCCCGATCTGTCGCAAGTGGTTCAGTCTGAGGGCTCAAATAGAGGTGCATTACAAGCTGGTGCATCTGAAGGAACCCTACCCTAAGAGGTATGTTCACCTGTACGCCTGTAGTTACTCAGTCTCACAGCGGCGAGCGTCCGCACAGCTGCCCGATCAAGGCTGCATCTAA
Protein Sequence: MSELKLCRICLNKDRKLFKIGQCNLKQYYEEITQNQVLTNDDIPQYFCFECAALLHKFHKFKEKCEYGRYTLKNLSSKGYMTYHVIDDIRKNRTDLLQSSDYINQEGQKRIKTVTVKYKTEKEPLEMENVTLNSLDTDDDDVKFEFIPESDHEEFSSNIKSEDEQSQNVTKTDSVFTDLDTKPYAVPCPTIDTSESVPPTEFNPDLTENNTIPTKTETSSTNIIENDPKNNIHMNSLYESDDNRLNDDNYDTDLESKTKLTNKDSRNLKKSKRPTRNSTRNNKNIFQPENYYSNSSDANFELDLDITHEESDNEDIKSKKGRRTTRKTAKNKLKTDLKDKDSDHKFVGIIRQPKDELSEGNWETKLLTDEEAMDQFKKKEFDSRYERMEFKCTKCFKGFSKNEMLLRHNKLWHDHGDNQCRFCHMQFKWKSKLQLHMRKHYYIYKCLRCGLEFFVKTGAVFHDEHHNGVTHTCRHCGEEYTHISTYYTHLRTSHRNAHACTLCGETFVSNAGVVVHMKRKHVMHVGNTAEPSTNIYCQKCKISFVSQSAYDTHLAVSELHEEETKDIKQPKRKRREIIANAHRCHHCDKKFNSGRQVRAHIQQEHPGQRKVERVVCEICGAVLSCSKMFKGVAAKLLREHVDRVHPGQRKVERLVCSICGEMVSTTYIHIHMNRHTRNKIFRCETCGKEFLCANSLTVHKMSHSGERPHGCPICPKRFSLKAQMEVHYKRVHLKEPYPKSGERPHGCPICRKWFSLRAQIEVHYKLVHLKEPYPKRYVHLYACSYSVSQRRASAQLPDQGCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00703468;
90% Identity: iTF_00701580;
80% Identity: -