Eexi000669.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352255.1:3615005-3636357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.25 16 6.4 3.3 1 23 189 211 189 211 0.96 2 21 2.4 1.5e+02 3.4 0.4 1 19 215 233 215 235 0.82 3 21 0.42 27 5.8 2.9 1 11 244 254 244 255 0.93 4 21 2.9 1.9e+02 3.1 0.3 1 19 253 271 253 273 0.81 5 21 0.42 27 5.8 2.9 1 11 282 292 282 293 0.93 6 21 2.9 1.9e+02 3.1 0.3 1 19 291 309 291 311 0.81 7 21 0.42 27 5.8 2.9 1 11 320 330 320 331 0.93 8 21 2.9 1.9e+02 3.1 0.3 1 19 329 347 329 349 0.81 9 21 0.42 27 5.8 2.9 1 11 358 368 358 369 0.93 10 21 2.9 1.9e+02 3.1 0.3 1 19 367 385 367 387 0.81 11 21 0.13 8 7.4 1.2 1 11 396 406 396 406 0.93 12 21 3.5 2.3e+02 2.8 0.4 1 19 405 423 405 425 0.79 13 21 1.7e-05 0.0011 19.6 0.8 1 20 434 453 434 455 0.94 14 21 0.0079 0.5 11.2 1.3 2 21 463 482 463 483 0.92 15 21 2.5e-05 0.0016 19.1 0.3 2 23 499 520 498 520 0.94 16 21 0.00027 0.017 15.8 0.2 1 23 525 547 525 547 0.98 17 21 0.00058 0.037 14.8 5.6 1 21 556 576 556 581 0.94 18 21 0.0013 0.08 13.7 1.8 1 23 589 612 589 612 0.89 19 21 0.015 0.95 10.3 0.2 1 23 618 641 618 641 0.87 20 21 0.0082 0.52 11.1 0.4 3 19 654 670 652 671 0.92 21 21 0.046 2.9 8.8 0.9 1 23 684 707 684 707 0.98
Sequence Information
- Coding Sequence
- ATGTCGATTTTGCACACATTCCTAAACTCCCCTAAAGACCTTACCATCTACGCCACCACTCGGCTCACCACGTCCCCCGTGACCTGGACAGACCGGCTGGAGACAGAAGCAGAGGACGATGCTAGGTTAGATGTGGAGGTCAAACAGGAGACTACAAAAAAAGAGTCGGCAGAGGGTGATTTTGAAGAAGGCAGCATTAAAGAAGAAGATACGGAGTTGTCTAACTTCTGGGAGGTAGCATTCGATCCTGAATCATCAGACGAGGATGTGCAGCTCTCAGAGATCAAGGACAAGAAGCAGAAAGAGAAGAGAGAAAGGAAGAAAAAGAAACATAAGACAAAACCCCCAGAACCAGTGAGCCGCAAATTGAAGAACCTACCCGACGTTGTGCAACTACACACAATGAATGAAGACGAGATGTGGGTAGTTCGCATGGAGGACGTGGGTAGCGAGTGTTTCCAGCGGATGAGGCATAAATGTGCGGACTGCATTATAGGGTTCAACACGGAGCGGTTAAAGGAGGCGCACGATAGGGGGAAACATAGACCAAAAACTGGCGGGGCCCACCAATGCGACGTGTGCAAAGCGTACTTCCTAACTAGTGATAATCTGTCAGTGCATCGCTCGCACCATCTAGCGGCGTACAGATGTCGCGTCTGCGGCCTGGTGACTACCCTCAAGAGGGGGATATCCCAGCACGCGTGCGCACTAAGCATCGTCAAGGAAGAGTTCCCCTGCACTTACTGTGATAAAGTCTTCAGATGTCGCGTCTGCGGCCTGGTGACTACCCTCAAGCGGGGGATATCCCAGCACGCGTGCGCACAAAGCATCGTCAAGGAAGAGTTCCCCTGCACTTACTGTGATAAAGTCTTCAGATGTCGCGTCTGCGGCCTGGTGACTACCCTCAAGCGGGGTATATCCCAGCACGCGTGCGCACTAAGCATCGTCAAGGAAGAGTTCCCCTGCACTTACTGTGATAAAGTCTTCAGATGTCGCGTCTGCGGACTGGTGACTACCCTCAAGAGGGGGATATCCCAGCACGCGTGCGCACTAAGCATCGTCAAGGAAGAGTTCCCCTGCACTTACTGTGATAAAGTCTTCAGATGTCGCGTCTGCGGCCTGGTGACTACCCTCAAGCGGGGGATATCCCAGCACGCGTGCGCACAAAGCATCGTCAAGGAAGAGTTCCCCTGCACTTACTGTGATAAAGTCTTCAGATGTCGCGTCTGCGGACTGGTGACTACCCTCAAGCGGGGGAATTCCCAGCACGCGTGCGCACTAAGCATTGTCAAGGAAGAGTTCCCCTGCACTTACTGTGATAAAGTCTTCAGTTCTAAATCCAAGCTGTCGTACCATCGCTCTGCGTCGTGCCGCGCGGAGCGACCGCAGTGCGACTGTTGTGGTAAAGTCTTCGCGAACAAGATGACCCTTAAGTACCATCTCAAATTACTACCGCTGAAGAAGGAAGACAAGCCTAAAGAGAAACTGTACATTCCTTGCAAAGGATGCAATAAGGTGTTCACTTCTAAGAAAAGCTATAGAGCACATGTTGTGATCCACGAAGGTCATTCCTACCCATGTCCTATTTGCGGCAAGCTGTTTATGTGGAAGCGGAACCTGTCTCGACACACGCGGGCTCATAAGGACAGAGACGCGGGCGCCACGCATCAGTGTCGTGAATGCAACAAGACCTTCGCATCGCGCGATTGCTACAACAACCACATGCGGCTTAGTAAGCGGCACGCTAGCGAATCTACTTATGTGCACGAATGCAACTACTGTGGCAAGAAGTTCCCGACGAAATGGTGTATGGTGGACCATGTGGACTGGGAACATCTGAAGCGGGTCAAGTACCAGTGCAGCGTGTGCTTCAAGGCGTTCAAAACAGCGAAGATAATGGTAGCTCACGTGAACAACATCCACGGCGGACGAAAACGAGAACCGGATGGCGAACATTTGTGTGAGGTCTGCGGGAAGTCGTACAAGTCCGTAAAACGTCTAAAAGCCCACGTGTGGGCGATGCACACGCAACGATCCTCCGTCAAAAGCTACAAGTGCACGCTGTGCGCAGCTTCCTTCACCTGGCAGACATCTATCTACAAGCATATGAAGATGATGCACAACAACAAACGGATCATCAAGGTTACCCGCGCGCCGTCAATCAAGAAACAAGATCCGTACGCCGATCTGCAGAATTTCATACATACGCTACAGCCGATTCCGCCCATACATGCATCACAGAACATTGTCTAA
- Protein Sequence
- MSILHTFLNSPKDLTIYATTRLTTSPVTWTDRLETEAEDDARLDVEVKQETTKKESAEGDFEEGSIKEEDTELSNFWEVAFDPESSDEDVQLSEIKDKKQKEKRERKKKKHKTKPPEPVSRKLKNLPDVVQLHTMNEDEMWVVRMEDVGSECFQRMRHKCADCIIGFNTERLKEAHDRGKHRPKTGGAHQCDVCKAYFLTSDNLSVHRSHHLAAYRCRVCGLVTTLKRGISQHACALSIVKEEFPCTYCDKVFRCRVCGLVTTLKRGISQHACAQSIVKEEFPCTYCDKVFRCRVCGLVTTLKRGISQHACALSIVKEEFPCTYCDKVFRCRVCGLVTTLKRGISQHACALSIVKEEFPCTYCDKVFRCRVCGLVTTLKRGISQHACAQSIVKEEFPCTYCDKVFRCRVCGLVTTLKRGNSQHACALSIVKEEFPCTYCDKVFSSKSKLSYHRSASCRAERPQCDCCGKVFANKMTLKYHLKLLPLKKEDKPKEKLYIPCKGCNKVFTSKKSYRAHVVIHEGHSYPCPICGKLFMWKRNLSRHTRAHKDRDAGATHQCRECNKTFASRDCYNNHMRLSKRHASESTYVHECNYCGKKFPTKWCMVDHVDWEHLKRVKYQCSVCFKAFKTAKIMVAHVNNIHGGRKREPDGEHLCEVCGKSYKSVKRLKAHVWAMHTQRSSVKSYKCTLCAASFTWQTSIYKHMKMMHNNKRIIKVTRAPSIKKQDPYADLQNFIHTLQPIPPIHASQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -