Eexi000541.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352255.1:1938133-1962266[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.26 17 6.4 0.5 1 19 282 300 282 305 0.93 2 11 0.018 1.1 10.1 5.0 1 23 312 334 312 334 0.98 3 11 1.5 95 4.0 1.1 1 23 338 361 338 361 0.93 4 11 0.00012 0.0078 16.9 1.8 1 23 393 415 393 415 0.98 5 11 0.0068 0.44 11.4 1.1 3 22 427 446 426 450 0.89 6 11 0.0017 0.11 13.3 1.3 1 23 486 508 486 508 0.97 7 11 0.0041 0.26 12.1 0.3 3 22 518 537 516 541 0.88 8 11 2e-05 0.0013 19.3 0.4 1 23 549 572 549 572 0.93 9 11 0.00018 0.012 16.3 4.3 1 23 578 601 578 601 0.96 10 11 2.5e-05 0.0016 19.1 0.8 3 23 610 631 608 631 0.91 11 11 0.0013 0.085 13.6 3.0 1 23 637 660 637 660 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCCCAAGCCAATGATTTGTGCAGTGGCTGTCTAGCCGTTGGCCGCAGAATGCTACTCATAAGCGACACTCAAAGAGAAAAGTGTTTCTTGGAAATAATCAGTGAACTAGCCATCACTCTTCCAAATTCAGCATTGTGGCTGTGTTGGGTGTGTGAGGCCAACATCACAAGGTTTACTAAGTTCAAGCTACAAGTGAAGCATGCCTATAAAGTACTAAATGATTTTACTGTTCAGAATGAAAGCCCAGATCAAAAACCGTCACTTAGCCAGCACGAAGCCTTCAACATCTCACTACCTCCATCCAACAAAGAAACTGATCTCATTTCTATGTGCACTGATACTTCTAATCCTACTGAAACCTCTACACCTACAGAAACTTCTATATCTACAGATATCATCAAAACAGAGATCTTTAGAACACAGATTAAATATGAGAATGATTTAACTGATGATGATGATGAGGATGATCAAGCACTGATAGACATATGCACTGATACTGGAATACATGATGATCAAGTCAGTGTCAGTGGTAAAAGTAATGGTAAAATTCAAAGTGATGGTAAAAATCAAAGAAATGGTAAAATTGATAAACCGAAACATGACGGTAAATTGAGACTCAATGGCAAATTGAAACACCATGGTAAAATGAAAAAGAATGGTAAATTGAAACACAGTGGTAAATTAAAACGCAGTGATAAATTGAAAGATGATGTTAAATTGAAATGCAGTGGTAAATTAAAGAACAAGAGTGTATTTAGAGAGATAGAGTTGACAGAGGAAGAGATATTTGAAGAGAGAAATAATTTAGCGCTAAGAGAGGACTATGTGAACGCCATGTTCAGATGTGAAAGATGCTTGCTCACCTTTCCCAATGAAGATGATATGAAGGAACATGATCTTAAGAAGCATGAAATGCACGCGTCTAAACACAAATGCAGTATATGTTCCTGCGCATTTAACTCTGAAGTGTCGTTCGCGTACCACCGCCGTCGACACGCCAGGAGGTACGAGTGCGGCCTTTGCAGCTTCAGGTGTACAAGCAAACTGGCGGCTAGGAACCATTCTGCTACCGTTCATTTACAGAGTTCATCGTACGATTTGGAGCGGATCTACAAAGACTGTGATTTAGAAACTACTGATAATGATCTCAATAGTACAAAAGAAGCTAAGTTCACCTGTGAACACTGCCCTAAAGTGTTCGGTTGGAAGACCTCGCTGAGGAAACATCTAGAGACACACAAGATAGAGGCTGGACAGAAACGGAAGCCTTACTGTGAACCTTGCAGTTTAACGTTCACGACTACCTCAAACCTTCAGAAGCACGCAAAGACAAGTTCGAAGCACCAAATACAACTGAAACTAAGAAAGATGAAAGAAACCAACCCTGCTGAATCCAGCGACAAACTGATAGCAGATATAACGAGCAGCATCAACCGCACGCGGCAGTCGTTCCCTTGTGCGCAGTGTGACAAGACGTTCCAGTGGAGGGGGAATCTACTGCGACATCTGCACAGCCACGCGGCTAGAGCTGCCGGCTCGCTAGTTTGCGCGCCGTGCGACCGCACGTTCTCTTCGTTGGCGACCTACACTCAGCATATGCGAGTCAGCAGGAAGCATGTCTCTGAGAATGATTTCAAGTACATGTGCAGAGATTGCGGTCGTAAGTTCGCGAATAAAACAAAGCTAACAGAACATATAGACTGGGAACATCTCAAGAACTACGTGCACACATGTACGGACTGTCAGAAGGTATTCAAGAGCCATACATCGCTGTACATCCATCGACAGGTGGTCCATCAAAAGTCAAGCTCTCAGCATCTCTGCGAGACTTGCGGGAAATCCTTCCCGAATCAAACCAAGCTTCGCTCGCACATAATAGCGCTCCACACGAGCGAGTCTCCGTACAAATGTGGCGTCTGCGGTGCTCGCTTCTCCTGGCACAGCTGTCTCTCGCGCCATCTCAGGAGAGTGCACCGGACTGACAAATAG
- Protein Sequence
- MEAQANDLCSGCLAVGRRMLLISDTQREKCFLEIISELAITLPNSALWLCWVCEANITRFTKFKLQVKHAYKVLNDFTVQNESPDQKPSLSQHEAFNISLPPSNKETDLISMCTDTSNPTETSTPTETSISTDIIKTEIFRTQIKYENDLTDDDDEDDQALIDICTDTGIHDDQVSVSGKSNGKIQSDGKNQRNGKIDKPKHDGKLRLNGKLKHHGKMKKNGKLKHSGKLKRSDKLKDDVKLKCSGKLKNKSVFREIELTEEEIFEERNNLALREDYVNAMFRCERCLLTFPNEDDMKEHDLKKHEMHASKHKCSICSCAFNSEVSFAYHRRRHARRYECGLCSFRCTSKLAARNHSATVHLQSSSYDLERIYKDCDLETTDNDLNSTKEAKFTCEHCPKVFGWKTSLRKHLETHKIEAGQKRKPYCEPCSLTFTTTSNLQKHAKTSSKHQIQLKLRKMKETNPAESSDKLIADITSSINRTRQSFPCAQCDKTFQWRGNLLRHLHSHAARAAGSLVCAPCDRTFSSLATYTQHMRVSRKHVSENDFKYMCRDCGRKFANKTKLTEHIDWEHLKNYVHTCTDCQKVFKSHTSLYIHRQVVHQKSSSQHLCETCGKSFPNQTKLRSHIIALHTSESPYKCGVCGARFSWHSCLSRHLRRVHRTDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00704380;
- 90% Identity
- -
- 80% Identity
- -