Basic Information

Insect: Eupithecia exiguata
Gene Symbol: ham
Assembly: GCA_947086465.1
Location: OX352245.1:7298878-7319810[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.034 2.2 9.2 0.1 2 23 108 130 108 130 0.93

2 9 0.0028 0.18 12.6 2.6 2 23 138 160 137 160 0.91

3 9 1.6e-08 1e-06 29.1 0.1 1 23 166 189 166 189 0.96

4 9 4.9e-06 0.00031 21.3 1.1 1 23 195 217 195 217 0.95

5 9 2e-05 0.0013 19.4 7.0 1 23 223 245 223 245 0.99

6 9 0.00033 0.021 15.5 0.4 2 21 253 272 252 273 0.94

7 9 1.2e-08 7.6e-07 29.5 0.7 1 23 667 689 667 689 0.98

8 9 4.3e-07 2.7e-05 24.6 1.7 1 23 695 718 695 718 0.97

9 9 4.7e-06 0.0003 21.3 3.3 1 23 724 746 724 746 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.034	2.2	9.2	0.1	2	23	108	130	108	130	0.93
2	9	0.0028	0.18	12.6	2.6	2	23	138	160	137	160	0.91
3	9	1.6e-08	1e-06	29.1	0.1	1	23	166	189	166	189	0.96
4	9	4.9e-06	0.00031	21.3	1.1	1	23	195	217	195	217	0.95
5	9	2e-05	0.0013	19.4	7.0	1	23	223	245	223	245	0.99
6	9	0.00033	0.021	15.5	0.4	2	21	253	272	252	273	0.94
7	9	1.2e-08	7.6e-07	29.5	0.7	1	23	667	689	667	689	0.98
8	9	4.3e-07	2.7e-05	24.6	1.7	1	23	695	718	695	718	0.97
9	9	4.7e-06	0.0003	21.3	3.3	1	23	724	746	724	746	0.98

Sequence Information

Coding Sequence: ATGGTGAGTGTAAACAGAAAACCCTCTATCAAGAAGCCGTGGAAGGTTCTTGGCAAGAAAGGAGTTCGTGTCTGGCTTGATGGGACCAACGAGAAGTCAAATTGGTTAAAGATGGTTCGCTCTACCAACTTCCCCAGTGACGTCAATGTGCAACAGATCTTGATTGGTGGACAAGTATGGTACAAGGTGGTCCGAGACATTCCATCCGGACAAGAACTGCTTCTGGGGCCTAGGACACCTCTACCTCTGCAAGACATCAATCCTTCACCAATTCCAGACGATATCAGGACAGAAGACGAAGATCGCGAAGACACAGAGCCTAGGTGTTCTTTCTGTGACGAGCCGTTTCCCAACATCGAAGCACTCGACCACCACCTGATCCAGGCTCATGCGCAGCCAGCGGCGGCTTGCCACTGCGAGCTCTGCAACCGCTCTTACAGTTCAAGGGCGCTGCTGCTGCGTCATCGCGCTCTCGCTCACAGCAACATCAGGAAATACCCTTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGAGCGCAGCACAAGGGCGCCCGCAGCCACGCCTGCCCCGAGTGCGGGAAAACCTTCGGGACTGCCTCCGGCTTGAAGCAGCATACACACATCCACTCCAGCATCAAGCCCTTTCAGTGCAAGGTTTGCTTCAAGTCTTACACCCAGTTCTCCAACCTGTGCCGCCACAGACGTATGCACGTCGCATGCCAATCTGCCATCGAGTGCGGCAAATGCGGTCAGTCTTTTAATTCTTACGTTTCTCTGACCAAGCATAAGAGATTTTGCGACACCGCTTCTGCCAATTCAGTTGGACTCAGAGGCCAAATGCCACAGGGACTCCCGCAGATTCCAACTCTACCAAACGTCGGAATGCCGAACCCGAACGGGGCCCATAACCCCTTCTCAATGTATCGGCCAGGCCTTCCTTTGCCATACAACACCTTTGCTCACTACCCAGCTGTACTCCAAACCTTATCAGCTGCGGCCGCAGCTTGCCCACCTGATTTTTTGAACCCCCTATACTTCAACGTTCAAGGAGCAAGGCTCGCAATGGAGCACGACATGGCAATGAATAGCGCTAATTTAGCAAAGCAGCAAGAAGGACGCATGTCAGTAAAGAGCATTGATAGTTCTTCTCACGATGAAACTAGAAAGTCAAAAGATTTAGATTTTGACTCTAACAAGGTTGAAAACAATGACAGAGTAACACCAAACAATCCAAGGAACCTGTACCCCAAACATTCTCCACTATCAAATGACGACACAACATCTCAAAATCGTCCTTCTCCTATAATGCCGATGCAGACACCGATACTGCCATACAATTTTCCTAGAGATGAACATAAGAGAAAGTCGCCGTTCACCTTTTCACTTACACATAATAATAATGAAGTCCAAGAGAGGAAATCAGTTTCTCCATTACCTACAGATTTGTCTAAAAATGCGGAAGAGGACATAATTTCAGAGATCGACCCTGAGGAGATAGATGATAAGAAAGACGAGAGTGACCAACCTCTTGACTTGTCAGTTTCTCGAAAACAAATTGATAAGGATTCCGAAGCTGATGCCGACGACCGTTCCTTTCGTCACTCTGTCAAGTCATATTCACCGCCAGAAAGCCCAGTGGAAAGGAGCAAGACTCCCGAGAACGATACCATGGACGTCGATGTGGAAGCGGTAGAGCCGAAACGAGATGATTCCCCGCCGCAGCTAGTGTCACCGCCGCTCGCGTTCCCTATGCCCGTTCACCCCTCACACAATCTTATCGATGCTATGTACCGTCCTCGATTTCCGTCCTTCCACTCAGCAGAGTCCCTACTCAACTCCGCTCACTCGCCCTACGTCCCAAGTCCGTTCAATTTTTTATCCCCCCTTCTCAACACTGAGGGCCCAGACCGGCAGCCTAGCGCATACGCCAAGTTCCGCGAGCTGAGCGCCGGCGCTGGTAAGGCTCGGGATCGGTACGCGTGCAAATTCTGCGGGAAAGTGTTCCCGCGGAGCGCGAATCTGACGCGACACCTCCGCACTCACACCGGAGAACAGCCCTACAAGTGCAAGTACTGCGAGCGATCGTTCTCGATCTCATCCAATCTGCAGCGGCACGTACGGAATATTCACAACAAGGAGAGACCGTTCAGATGTCCCCTTTGTGATAGATGCTTCGGGCAGCAGACGAACCTCGACCGACATCTGAAGAAGCACGAGGCGGAGGGCGGCGATTCACCGAGTTCAGCGGATACGGAGCGCGAGGATACGTATTTTGATGATATCAGGTCTTTCATGGGAAAGGTGACGTGTTCCCCGCCAGCGTCGTCTCCGCTGGCTCCGTCCCCGCACCCCGCACCCCCGCACCGCTCTCTCGCCATCTCCACATAG
Protein Sequence: MVSVNRKPSIKKPWKVLGKKGVRVWLDGTNEKSNWLKMVRSTNFPSDVNVQQILIGGQVWYKVVRDIPSGQELLLGPRTPLPLQDINPSPIPDDIRTEDEDREDTEPRCSFCDEPFPNIEALDHHLIQAHAQPAAACHCELCNRSYSSRALLLRHRALAHSNIRKYPCENCPKVFTDPSNLQRHIRAQHKGARSHACPECGKTFGTASGLKQHTHIHSSIKPFQCKVCFKSYTQFSNLCRHRRMHVACQSAIECGKCGQSFNSYVSLTKHKRFCDTASANSVGLRGQMPQGLPQIPTLPNVGMPNPNGAHNPFSMYRPGLPLPYNTFAHYPAVLQTLSAAAAACPPDFLNPLYFNVQGARLAMEHDMAMNSANLAKQQEGRMSVKSIDSSSHDETRKSKDLDFDSNKVENNDRVTPNNPRNLYPKHSPLSNDDTTSQNRPSPIMPMQTPILPYNFPRDEHKRKSPFTFSLTHNNNEVQERKSVSPLPTDLSKNAEEDIISEIDPEEIDDKKDESDQPLDLSVSRKQIDKDSEADADDRSFRHSVKSYSPPESPVERSKTPENDTMDVDVEAVEPKRDDSPPQLVSPPLAFPMPVHPSHNLIDAMYRPRFPSFHSAESLLNSAHSPYVPSPFNFLSPLLNTEGPDRQPSAYAKFRELSAGAGKARDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDTYFDDIRSFMGKVTCSPPASSPLAPSPHPAPPHRSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705315;
90% Identity: iTF_01161599;
80% Identity: -