Eexi000803.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352255.1:5911442-5922620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00025 0.016 15.9 0.7 2 23 301 322 291 322 0.97 2 12 0.00051 0.033 14.9 0.9 1 23 328 350 328 350 0.97 3 12 0.00012 0.0074 17.0 2.0 1 23 356 378 356 378 0.97 4 12 3.4e-05 0.0022 18.6 0.7 1 23 384 406 384 406 0.97 5 12 0.0017 0.11 13.3 1.1 6 23 415 432 413 432 0.96 6 12 0.00099 0.063 14.0 4.2 1 23 435 457 435 457 0.97 7 12 0.022 1.4 9.8 0.4 1 23 463 485 463 485 0.97 8 12 0.0022 0.14 13.0 0.8 3 23 690 710 688 710 0.97 9 12 2.5e-07 1.6e-05 25.3 0.5 1 23 716 738 716 738 0.98 10 12 7.5e-06 0.00048 20.7 2.0 1 23 744 766 744 766 0.98 11 12 5.4e-06 0.00035 21.1 0.4 2 23 773 794 772 794 0.95 12 12 8.3e-06 0.00053 20.6 0.4 1 23 800 823 800 823 0.96
Sequence Information
- Coding Sequence
- ATGGCTTATCCCAAAGTATGCCGAGCCTGCCTTGGTACCGGTCTAAAACTGTACAACATTGAAGATCACACACTTCTGGAATTGTATGAAAAACTCACTAGTTCTCAGTTGATTACAGAAGACTCCCGTCCGGACACACTGTGCTACATCTGTCTGTGGCAGCTACGGCGATGTGCTCGCTTCTCAGCCACGGCTCAGCGGGCAGAGAAGTACCTGCAAGATCTACTAGATAATAATGTACAGGTGACGCAAGAAACAGTTGCTACACTCAAAATAGTCTCAACTCTATCTACCAAAACATTAGAATCAGTTTCGTATGATAGCTCAACCGACATTCGCACATCCTTCGAAGCAACTATCAAAGAGGTTAAAATAGAGTTTTCAGACTCAGAGATATCAAGAGAAGATATATTCACTAAAACAGAAAGAGTTTCTACAGAAGAGATAAAAGATTTGATAACACAAGACGGTCCGGACACACTATGCTATATCTGTCTGTGGCAGCTACAGAGATGTGCTCGCTTCTCGGCCATGGCTCAGCGAGCAGAGAAGTACCTGCAAGATCTACTAGATAATAATGTACAGGTGACGCAAGAAACTGTTGCTACCCTCAACATAGTTCCAACTCTATCTACAGTTGTATTAGAGTCTGTAACGCTTATTGATGATAGCTTAACGGACATCGGCCCATCCTTCAAAACAGGTTCTATCAAAGAGGTTAAAATAGAGTTTTTAGACTCTGAATTATACAGAGAAAAGATATTCACTAAAACAGAAAGAGTTTTTACAGAAGAGATAGAAAACGTACTAATAGAAGAAGTAAAAATACCTACAGAAGAAAATATCATAATAAAAAAAGAAAACTCGCATGACAACTGTGAAAAAACATATAAACAGCTGATCTGCGAGCAATGTGACGAGCATTTCTCTACTGCGACTGCTTTGAATGGACATATGTCGATTCACACAGGAGATAAACCGTACTACTGCAGCAATTGCAACCTTGGATTTGAGAAACCGGACACATATAGGAAACATATGGACTTACATGATAAAGATAAACCTTACGCTTGCAGCACTTGCCCGAAGAAATTCCACTTTGCCAAAGCTTTACAGAAACATATGAGTATTCACGAGGAGGCAAAACCCTTTGCTTGTAGTGAATGTGATATGACTTTTGAAGTGCCATGTGGTTTAAAAAAACATATGTTAACACATACTGATAATCCGTATATTTGTTGGTGCAAGAAAGCTTTTCGCTACGCTGCTAGGCTAAGAAGACATATGCTGACACACACAAACCATACCTGTGATAAATGTAATGTCACTTTCGATAAAACGAGCAGCCTAAATAAGCATAAAAGAGACCATGAAGAAGGAAGGCCGTACTATTGCGAAAAATGCGACCTAGAATTTAGTATGCTAAGCATTTTTGCTATACACATGTCTAAGCACACCGAACCAACAGACATACAGCAAGATATAGGTTTAACCCAATTACCCAAATCGACGCGAAGAGAACCAACAGAGCAAAATGAAAACCAATCACCCGGATCAAAAGATAGCGAAATATTAGAGCAAAATAAAACCCTATTACCCGGATCAAAAGATAGCGAACCAATAGAGCAAAATAAAACCCAAATACCCCGATCAAAAGATAGTGAACCATTAGAGCAAAATAAAACCCAAATACCCCGATCAAAAGATCGCAAACCAATAGAGCAAATTAAAACCCAATTACCCCGATCAACAAATAGCGAAACATTAGAACAAAATAAAATCCAAGTACCCGGATCAAAATATAGCAAACTAATAGAGCAAATTAAAACCCAATTACCCCGATCAAGAGATAGCGAACCATTAGAGCAAAATGAAACCCAATTACCCCGATCAACAGATAGCGAAACATTAGAACAAAATAAAATCCAAGTACCCGGATCAAAATATAGCAAACTAATAGAGCAAATTAAAACCCAAATACCCCGCTCAAAAGATAGCGAACCATTAGAGCAAAATAAAACCCAATTACCCAGACTAAAGAAGCGTAGAACAAGAAAGGGGCTTTTTTGCCCAGTTTGCAATAAACAACAGCATTCACCTTCACAGCTTATTTCACATATGAGAGTTCACACCGGAGAGAGACCGTATGCCTGTACGCAATGCGGTAAAGCTTCCCGAACTCCCACAGCCCTAAAACGGCATATGAGAACTCACACAGGAGAGAGACCATATGCATGTACGCAATGCGGGAAAGCCTTCCGAACTCCGACAGGCCTAAAATGCCATATGAGAACTCATACAGGAGAGAAAGTCTGCTCTTGTGAGATCTGCGGCATATCCTTCACTCAGATCAGCGCGTTAAACAAACATATGGTTATACATACAGGGCAGCTTCCATACGTTTGCAATTTGTGTGATAAAGCATATAAACAAAGTGGGCAGTTAAATTCACATGTAAAGAACTTACATCAAGGTGTAAGATTTGTTATTCCGATCCAAGATGGCGTACAATCAGAAAATGGCGCCAGTGAGCAGATCTGA
- Protein Sequence
- MAYPKVCRACLGTGLKLYNIEDHTLLELYEKLTSSQLITEDSRPDTLCYICLWQLRRCARFSATAQRAEKYLQDLLDNNVQVTQETVATLKIVSTLSTKTLESVSYDSSTDIRTSFEATIKEVKIEFSDSEISREDIFTKTERVSTEEIKDLITQDGPDTLCYICLWQLQRCARFSAMAQRAEKYLQDLLDNNVQVTQETVATLNIVPTLSTVVLESVTLIDDSLTDIGPSFKTGSIKEVKIEFLDSELYREKIFTKTERVFTEEIENVLIEEVKIPTEENIIIKKENSHDNCEKTYKQLICEQCDEHFSTATALNGHMSIHTGDKPYYCSNCNLGFEKPDTYRKHMDLHDKDKPYACSTCPKKFHFAKALQKHMSIHEEAKPFACSECDMTFEVPCGLKKHMLTHTDNPYICWCKKAFRYAARLRRHMLTHTNHTCDKCNVTFDKTSSLNKHKRDHEEGRPYYCEKCDLEFSMLSIFAIHMSKHTEPTDIQQDIGLTQLPKSTRREPTEQNENQSPGSKDSEILEQNKTLLPGSKDSEPIEQNKTQIPRSKDSEPLEQNKTQIPRSKDRKPIEQIKTQLPRSTNSETLEQNKIQVPGSKYSKLIEQIKTQLPRSRDSEPLEQNETQLPRSTDSETLEQNKIQVPGSKYSKLIEQIKTQIPRSKDSEPLEQNKTQLPRLKKRRTRKGLFCPVCNKQQHSPSQLISHMRVHTGERPYACTQCGKASRTPTALKRHMRTHTGERPYACTQCGKAFRTPTGLKCHMRTHTGEKVCSCEICGISFTQISALNKHMVIHTGQLPYVCNLCDKAYKQSGQLNSHVKNLHQGVRFVIPIQDGVQSENGASEQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -