Eexi000811.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352255.1:6021507-6026674[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.034 2.2 9.2 0.1 5 23 144 162 143 162 0.96 2 12 5.9e-07 3.7e-05 24.2 5.6 2 23 193 214 192 214 0.97 3 12 0.0022 0.14 13.0 0.2 1 23 286 308 286 308 0.97 4 12 1.8e-05 0.0011 19.5 3.6 1 23 312 334 312 334 0.99 5 12 2.3e-06 0.00015 22.3 1.6 1 23 340 362 340 362 0.98 6 12 6.1e-05 0.0039 17.8 0.7 1 23 368 390 368 390 0.98 7 12 0.11 7.1 7.6 2.8 1 23 397 419 397 419 0.95 8 12 2.2e-06 0.00014 22.4 2.3 3 23 427 447 425 447 0.96 9 12 1.7e-06 0.00011 22.7 0.9 3 23 455 475 453 475 0.98 10 12 2.2e-07 1.4e-05 25.5 1.6 1 23 481 503 481 503 0.98 11 12 2.1e-05 0.0014 19.3 2.4 1 23 509 532 509 532 0.98 12 12 7e-07 4.4e-05 24.0 5.4 1 23 537 559 537 559 0.98
Sequence Information
- Coding Sequence
- ATGCACCCTTCATTGTGTAAAGTGTGTTTGGCGTGGAATCGCAAAACACAGTTCATAAGAAATAATAAAAAACTTCGACAAACATTTGAGAAACTTACCAATTTACAGATTGACACTGGTGTCAGTGTTGATAAAATATGTTATACATGTTATTGGGAGCTGCAGAAGTGTTCCAAGTTTGCGGACCTGGCACGGAAGTCTAATGGCATACTCAGAGATTTAAGGAAAAAGGGTTTTAAGGTTACTCCTGAAACATTTCAAAACCTCGACATAAAACCGGTTGAAAAATTGTCCCTAGTCAATGTTACGTCAATATTAATAGAGTCCAAAACCGCTGACATACTCAGTCTTGAAACGAAAGTTAAAGAACAACCATTTGCCGGTAAATTCGTAAAGGTAGATAAAAATAAAGAAAACGAGTCATACACTGAATGCCAAAGATCATTTGCAATAGAGAGTGATTTATATGATCACTTGAAAAGTCATAGGGACAGATTTGGTTCCGATCAGACTGACACAAAAGCCGTACACGAACGCTATTTAAACTTGCTCACTAAAATTCACACGGAACAATTACAATGTGACGTCTGTGATAAATGTTTTTGCAATAAAGAAAACCTGAAACGGCATATCACTACACATTTAGTAGAAACGTCAACCGATAGAATAGAATCCTATTTAGAAAACTCATTAAATAGTGAAACCTATTCTGAAGACTTAATAGAAAATGAGAACTCAGTAGGGAATTGGGAAATATACGAGCTGGAACAAGACAAAGAAGAACTAGTGCTTGAAATAGACGAAAATGTCGACCTCATATCAAATGATATCGAAGAGAACCAGAAAAATAAACAATACCCATGCTATCAATGTCCCGAGTACTTCGACATGGAAAACGAATTAGAGAAACACATGGAAAACCATGAAAAACGATACTCCTGTACACAATGCAGCAAAACATTTCCCAACAAAGAAAAATTACGGTACCATACCAAAACACATACAATAGGCAAACCATTTACGTGCGAGCAGTGTTCAAAAGCATTCTCCTTAAAAGTATACCTGAAGAGACACATGAAAATACACGCAGAGGAGAAACCATACGCATGTGCGGACTGCGACCGGACATTCGCATTCAGAAACAGCTTCCTCAAGCACGTACAAACGCACAGCGAGAAGGTTTACACACATTCGTGCGACCGGTGCGCAAAAGCGTTTACTGATATCAAAAGCCTGAAATGCCACATGGTGGTCCATTCTGGTGTGAAACCTCACTTGTGCACGGTTTGCGGGAGACGGTTTATCAGGAATTTTCAGTTGAAGGAGCACATGAGAGTGCACACGGGGGAGAAGCCGTTCGGTTGCACCGTGTGTGGGAAGACATTTACTCAGGCTAGCTCGCTGAATTTGCATAAAAAGAGTCACACAAGCCTCCGTCCCTTCATCTGCGAAGTCTGCTCCAAGACTTTCAACAACAAATACAGTCTGCAGAAGCACCTCCGCATACACACAGGGGAGAGGCCCTACCAGTGCGCTGTCTGCGAGCAGCGGTTCACTTATAACAGCGGGTTACATGACCATATGCGCAGATTCCACAATAAAGGGAACTTCACTTGTGGTAGTTGTTCCAAGACGTTCACCAGAAACAGTCATTTGCAGCGCCATTTGAAGACTCATCTCACGGAATAG
- Protein Sequence
- MHPSLCKVCLAWNRKTQFIRNNKKLRQTFEKLTNLQIDTGVSVDKICYTCYWELQKCSKFADLARKSNGILRDLRKKGFKVTPETFQNLDIKPVEKLSLVNVTSILIESKTADILSLETKVKEQPFAGKFVKVDKNKENESYTECQRSFAIESDLYDHLKSHRDRFGSDQTDTKAVHERYLNLLTKIHTEQLQCDVCDKCFCNKENLKRHITTHLVETSTDRIESYLENSLNSETYSEDLIENENSVGNWEIYELEQDKEELVLEIDENVDLISNDIEENQKNKQYPCYQCPEYFDMENELEKHMENHEKRYSCTQCSKTFPNKEKLRYHTKTHTIGKPFTCEQCSKAFSLKVYLKRHMKIHAEEKPYACADCDRTFAFRNSFLKHVQTHSEKVYTHSCDRCAKAFTDIKSLKCHMVVHSGVKPHLCTVCGRRFIRNFQLKEHMRVHTGEKPFGCTVCGKTFTQASSLNLHKKSHTSLRPFICEVCSKTFNNKYSLQKHLRIHTGERPYQCAVCEQRFTYNSGLHDHMRRFHNKGNFTCGSCSKTFTRNSHLQRHLKTHLTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00704260; iTF_00706259;
- 90% Identity
- -
- 80% Identity
- -