Eexi000563.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352255.1:2288625-2292787[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.6 1.7e+02 3.3 2.4 3 23 149 169 148 169 0.94 2 20 0.16 10 7.1 1.8 1 23 175 198 175 198 0.97 3 20 0.17 11 7.0 0.3 1 23 202 224 202 224 0.96 4 20 0.022 1.4 9.8 2.5 1 19 230 248 230 253 0.89 5 20 0.0052 0.33 11.8 0.6 1 23 258 281 258 281 0.96 6 20 2.8e-05 0.0018 18.9 4.1 1 23 287 309 287 309 0.97 7 20 1.5e-06 9.4e-05 22.9 3.2 1 23 315 337 315 337 0.96 8 20 0.00032 0.02 15.6 0.4 1 23 342 364 342 364 0.98 9 20 0.0002 0.013 16.2 0.5 1 23 369 391 369 391 0.95 10 20 8.1e-06 0.00052 20.6 1.3 1 23 397 419 397 419 0.98 11 20 0.00031 0.02 15.6 3.2 1 23 425 448 425 448 0.96 12 20 3.4e-05 0.0022 18.6 1.3 1 23 455 477 455 477 0.97 13 20 0.00027 0.017 15.8 0.8 1 23 483 505 483 505 0.97 14 20 1.1e-06 7e-05 23.3 0.0 1 23 511 533 511 533 0.98 15 20 0.00019 0.012 16.3 2.4 1 23 539 562 539 562 0.97 16 20 0.0018 0.12 13.2 1.9 2 23 569 590 568 590 0.96 17 20 0.00013 0.0083 16.8 1.8 1 23 595 617 595 617 0.98 18 20 0.0027 0.17 12.7 3.7 1 23 621 644 621 644 0.89 19 20 0.058 3.7 8.5 0.0 1 23 650 672 650 672 0.98 20 20 0.00026 0.017 15.9 1.0 1 23 678 701 678 701 0.96
Sequence Information
- Coding Sequence
- ATGAATAGCGAAGATGGATTACCAGAAAGGATTTGCTATATTTGCACATCGCAATTGGAAGTAGCTAGAAAGATTATCAAAACGGCAAGAAAATCTGAAAATgttttgtcggaactcttttacaatggagtgcagCTTTCAGAGAACATAGTGTCGATCTTCAACCGGCGAGCCAAACCGACCTACACGCGTTCCTCTGTCCAAGTGGTAACTTACAGTCCTGATGATGATGATACTGTTGCTGTCAAGGATGAGGTAGTGGATGAAGAAACCGACCTTAGTGCGCTATTTGAAGATACAGGTTCAAGTTTAAACACAATCAAGAATGAAACAACACAGGGACAGCAAATAAAACTGGAAGTGGATTTTTATGAAGAAATAGAACTGAGCAACCACAATACCAACAAGAAAACTATCATATCTGGCATTCACCAGTACGGATCTTGCGATGCGTGCGACTTCAAATGTGATTCGGATATCCGCCTAAAAAAACATCTTAAAATGCACGATCCAAATCGAAAATATCCATGCGACTACTGCACGTTACGTTATCTCTCGGAATATCATCTTATGCTACATAAAAATAGAGTCCATAAACGCATGTACGAATGTCGTAAATGCAAAATAATATTTTGGAACCCGGTTAAATATCAAAACCACGTAATGGCTCACACCGCGAAAGATTTGTACTATTGTGAGAACTGTCCCAAAGCGTTTGATCAGTTGAAAAAGTTGAGAGGCCATTGTTATACAGTCCACCGTCGTTTAAGACATCCATGTGATAGATGCAATTATACATCGACAAGCTACGAATGGCTTCAAGACCATATTATTAGGATTCACGCGAAAAGTCCCTATTATATTTGTGATTTTTGTCATAAGAAATTCATTTCGAAATCAACTTTAAGAAACCATCTGTCAAGCCATTACGGACACCGAACGTATCTTTGTCATTTGTGCCCTAAAACATTTACAAGGAACCAGAATTTAAGAAATCATATCAAGTTACATACTGGAAAACCTTTCAAATGTGAGATCTGCGAGAAATCTTTCACTGAAATATCGATTCTTAGAAAACATGCTTTAACACATACTTCCAGGGATTTCCTATGCAATATTTGCCAAAAAGGTTTCTTCCGTCCAGATATATTAAAAAATCATATGAAGATTCACACTGCTTTAAAGATTTTCGAGTGCGACATGTGTGATAAGAAATTTATAAACAACACGTACGTGAAAAAACATATGGAATCCCATTCGACCGAGAAACAGCATACATGTGCTATCTGCGAGAAAGATTATAAAACTTCTCAGTCTTTAAAACATCATATAAAATTGATACATGAAATAAACGAAAAGTCATATGAGTGTGACATATGTGCGAAGAAATTTACTAAAAAACAGTACTTGGAAAATCATATGGAATTTCATTTGCGTAAAAAGCGGTTCGCGTGTGACATGTGCGATAAAAAATTTCGCAGTAAAGTTATACTGGTGCTACACAGGAGAACTCATACAGGCGAAAAACCATATGAGTGCGATGGGTGTGGTAAAACATTTGCTCAGAGGGCCGCCGTGATACGTCATATAAGAGCTCATAACAAAGACAAGCCATTTAAATGCGATATGTGCAAAAAATCCTTTGCAGAAAAACTATCCTTACGAACTCACAAATTAACTCGTCACGATAAAATCGAAAAACTAATTTGCAATATATGCTGCAAGGTTTTTATTGATAAAAAAAAACTCTCGAACCATATACAATCTCACAAAGAAAAGCCGTTTCCTTGTGTGAAGTGCAAAAAAACATATTTTAAACTCAGCAATTTAACGCAACACGTTAAAATTCACCCCGCTGAGTTTCACTGCGCTTTTTGTGATGAAGAATTTGATACGAAAAGTAATTTACACCGGCATAATGTGAAAGAGCATAATGCCTTATGTAGATACGCCTGCAATGTGTGCGAGTCACCATTCGAAGCGCTTATGGGATTGAACGCTCATGTCAGAAAACACAGTGGAGAAAAACAATTTGCCTGTGAAATGTGTTTTAAAACGTACGTCGAGAGGAGAGATTTAATCCACCATATGAAAATTGTTCACAATAAACTAGAATGGTTTAATTAA
- Protein Sequence
- MNSEDGLPERICYICTSQLEVARKIIKTARKSENVLSELFYNGVQLSENIVSIFNRRAKPTYTRSSVQVVTYSPDDDDTVAVKDEVVDEETDLSALFEDTGSSLNTIKNETTQGQQIKLEVDFYEEIELSNHNTNKKTIISGIHQYGSCDACDFKCDSDIRLKKHLKMHDPNRKYPCDYCTLRYLSEYHLMLHKNRVHKRMYECRKCKIIFWNPVKYQNHVMAHTAKDLYYCENCPKAFDQLKKLRGHCYTVHRRLRHPCDRCNYTSTSYEWLQDHIIRIHAKSPYYICDFCHKKFISKSTLRNHLSSHYGHRTYLCHLCPKTFTRNQNLRNHIKLHTGKPFKCEICEKSFTEISILRKHALTHTSRDFLCNICQKGFFRPDILKNHMKIHTALKIFECDMCDKKFINNTYVKKHMESHSTEKQHTCAICEKDYKTSQSLKHHIKLIHEINEKSYECDICAKKFTKKQYLENHMEFHLRKKRFACDMCDKKFRSKVILVLHRRTHTGEKPYECDGCGKTFAQRAAVIRHIRAHNKDKPFKCDMCKKSFAEKLSLRTHKLTRHDKIEKLICNICCKVFIDKKKLSNHIQSHKEKPFPCVKCKKTYFKLSNLTQHVKIHPAEFHCAFCDEEFDTKSNLHRHNVKEHNALCRYACNVCESPFEALMGLNAHVRKHSGEKQFACEMCFKTYVERRDLIHHMKIVHNKLEWFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -