Edod006466.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000030.1:440797-447996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.088 5.4 8.0 0.3 2 20 493 511 492 516 0.89 2 11 0.0066 0.4 11.5 3.7 1 23 530 553 530 553 0.97 3 11 0.047 2.9 8.9 0.6 3 23 560 582 558 582 0.90 4 11 0.021 1.3 10.0 0.0 2 21 633 652 632 653 0.95 5 11 0.0042 0.26 12.2 3.7 1 23 704 725 704 725 0.98 6 11 0.001 0.064 14.1 0.2 1 23 731 754 731 754 0.94 7 11 0.0027 0.16 12.8 1.4 1 21 772 792 772 793 0.93 8 11 0.03 1.9 9.5 0.0 3 23 803 825 802 825 0.90 9 11 0.0079 0.48 11.3 4.4 1 21 833 853 833 855 0.94 10 11 0.0066 0.4 11.5 0.7 1 20 861 880 861 886 0.92 11 11 1.2 77 4.4 3.6 1 23 892 915 892 915 0.90
Sequence Information
- Coding Sequence
- ATGCTGTCGCCAAGAGATGACGATGACGACGACACGCACCTCTGCATCAAATGCAACTCGACCGTCATCGGCCTCGACAACTACGTCAAGCACAGAAAGGACAGATGCGGCAAAAAGTTGGAGAGCAAAGATTTACCACCCATCGACACTTTAGACCCCACATACAACCTGGGGGCCGACGTTTTCTTCCAATCCTTGGAGCTTCAGAGCAGCGTCAAGAAAACTGTACTGTCGAGACTGACACCACCGATTCCTATATCTAAACCAAGCATAGACAGGAAGAACTCTTTACCCATTGCAACAGTATCCAGACCACAGATGAGCCCACTAGAAACCAATCTCCGAGGAGAGGACTGGATAGGCGGACACACTTTACGGATTAGCGGAAACGAAGAGGATAACCAGACAAAGTTGATCAATGCAGTGGCCAGCATTAGTGGTGCAGTTAAAAAAGACACTAATACGTCATACACGATAGGTTATAATGACTATAAAGGAGATGAAGAAAGCGATGAATCAGAAGTCTTTGAAGAAGATGACGAAGAAGAACACACTGGTGGAAAATGGAAACCACCAGTTAACTACACAGGCGGAAAGTGGCGCCCAGCATCACCAGAACACGATTGGGATGACCCAGAACCGACCGCTTCTTGGAAAACTTTACTTCCAGAGGTGGATGACAACCACGATGAAGACTATGATGCTCCACCTCCAGGACACACTAAGGGCAAATGGGTGCCCGGAGCGAACGAGAAAACACAAATAATGCAAACGACTCTACAGAGCAAAGGGTCGGTTCAATACTGGTGCGGACCATGCAACAGGAGACTGGGCTCCCGAGCCATCTATGACAAGCATCTGAGATCTGCGCTCCATTTAAAAAAGATTCAACCAGAACAGGAGCTCGAATATTCCGGACATTTAAAACCGATAAAAACAGTCGAAAAACGTAAACTGAGACCTTCCAAGTTTGTAAATGATGAAATCTATTCAGAAGTGAAACGGAAGAAGAGACAGAAGGGTGTAAGTTTGAGTCTCAAAATAGATCTTAAGAAAAGGAAGAGGAAGTCACACTTCGTTCACTGCGCCGGCTGCAAGTCTCGTGTCAGAACGCATTTGATGGGGAAGCATCTCATatcccactaccacttcaggaAAGCAGCCGGAGTGACCGACTCTTTATACCAACAACTGATTTTAGACAATATAACCGCAATCGTTCATCAGTCGCCTTTTCAATGCAGCCCTTGCAAATTCTACACGAACTGGCTCTCCACCTTCATGCAGCACTGGCGCTCGGACGAGCACGAGTGGACCATGGCCTTCATAGAAGGAATCTTCTGGTGCTCGTTCTGCAAGTTTGAATGTGAGACCTCTCAGGAGATGCTGGAACACCTGACAGGCTCTGATCACAGCGAAGTAATTGCAGTCATCAACAGGTCCATGCCAATTATGATCAGAAAGAAATCTGTTCTCAAATGTGACACTTGCAATGGAGTATTTAgattaaatattgaattaaagAAGCATAGCGCGAAGAGCGGTCACCGATTGTCGTACACAGCGACTGACACGTACCAGGAACTCCATCAATGTGAGCAATGTAAAGCTAAGTTTAAAACGACGCAAACCTTGGCTTCTCATTTGAAATCTAAGCACAAACAAAAGGCTCATCTCTGCCTCGTCTGCTCTAAGACCTTTGATACGGCTGAAGCGGCTAAGGTACATCGCCAGACCACGGAGCACAAGGTGAACCGTAAGGAGTTGCTCATACGGCAAGGACTGATCACAAAGGATTTGAGGAAGAAGTGTCCGTATTGTACGGAACACGTGATGCTTAGGAACATTCTGGCGCTGAAAGAACACATTCGTACGTGTCATCCTGATATCAGGAAAACGTGTCCAAAGTGCGGCATGGAGTTCATCCTCTCCCAGGAAGTGACGACGCACATCCGCGGGcgagcttgccgcttccaggcGTCGGCGCGCGTCGACTCCTCCGCCTTCTGGAACTGCAGCCAGTGCCTCTTCACCACGGACTCGCAGGCCGAGTGCTACTTCCACGAGGTCCTCCACGAGCTGCCCTTGACAATCGACGGCATAGAGAAGTACACCTGCCCCTTCTGTCAGAAGTATTTCAAGAAGACCTCGCTTCGTCTGCACCTGAGGCAGCATACCTTCGAGAGGCCGTTCATCTGCTCCGTCTGCCGAGCCAACTTCACCCGGCAGACCAGCCTGGCCAACCACGTGAAGGCTGAGCATGGGGATAGTGAGAAGGTGCCAGGAGTACTAACCGCTGTCAAGAAACCAGATCATAGATGTGAAAAGTGTGGGACCAGATTCCCTTACAAAACGGCTCTCGGGCGCCACGTCTGCATCCGCGCCCTCACTGGCGCCGACCGCAACTGCGCTGTTGAAGACTGCAACTATGTCGCCTCCAGCGCCCTGCAATTGATAAAGCATCAACGAGTACACGGCGATTCGAAGGCCTTGCGGCACCAGTGCCCGCAGTGCCCCTTCCGAGGGTCACAAGCCAGCCACTTGCGGAGACACCTCATGTGCCACAAGGGGGACAAGCCTTATGCATGTCCACACTGTGACTTTACAAGCGGAAGTTTGGAAAACCTTCGCAAGCACGCGCTTCGAAGTTCACGCCACAAGGATGTGTTCCTCTACCTTTGCAAGCATTGTGAATACAAATGCAACTTGGCAACGGAATTCCGGACTCATCTCACTGCCGCACATTCGGCCAAGTATGATCCAAAGACGGCTATGCAAGCTGCGAAGGTGCATTTGATGAAACCAGAAAGCGCTCAGTAA
- Protein Sequence
- MLSPRDDDDDDTHLCIKCNSTVIGLDNYVKHRKDRCGKKLESKDLPPIDTLDPTYNLGADVFFQSLELQSSVKKTVLSRLTPPIPISKPSIDRKNSLPIATVSRPQMSPLETNLRGEDWIGGHTLRISGNEEDNQTKLINAVASISGAVKKDTNTSYTIGYNDYKGDEESDESEVFEEDDEEEHTGGKWKPPVNYTGGKWRPASPEHDWDDPEPTASWKTLLPEVDDNHDEDYDAPPPGHTKGKWVPGANEKTQIMQTTLQSKGSVQYWCGPCNRRLGSRAIYDKHLRSALHLKKIQPEQELEYSGHLKPIKTVEKRKLRPSKFVNDEIYSEVKRKKRQKGVSLSLKIDLKKRKRKSHFVHCAGCKSRVRTHLMGKHLISHYHFRKAAGVTDSLYQQLILDNITAIVHQSPFQCSPCKFYTNWLSTFMQHWRSDEHEWTMAFIEGIFWCSFCKFECETSQEMLEHLTGSDHSEVIAVINRSMPIMIRKKSVLKCDTCNGVFRLNIELKKHSAKSGHRLSYTATDTYQELHQCEQCKAKFKTTQTLASHLKSKHKQKAHLCLVCSKTFDTAEAAKVHRQTTEHKVNRKELLIRQGLITKDLRKKCPYCTEHVMLRNILALKEHIRTCHPDIRKTCPKCGMEFILSQEVTTHIRGRACRFQASARVDSSAFWNCSQCLFTTDSQAECYFHEVLHELPLTIDGIEKYTCPFCQKYFKKTSLRLHLRQHTFERPFICSVCRANFTRQTSLANHVKAEHGDSEKVPGVLTAVKKPDHRCEKCGTRFPYKTALGRHVCIRALTGADRNCAVEDCNYVASSALQLIKHQRVHGDSKALRHQCPQCPFRGSQASHLRRHLMCHKGDKPYACPHCDFTSGSLENLRKHALRSSRHKDVFLYLCKHCEYKCNLATEFRTHLTAAHSAKYDPKTAMQAAKVHLMKPESAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706565;
- 90% Identity
- iTF_00706565;
- 80% Identity
- -