Edod001415.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- Znf784
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000005.1:533790-557375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.038 2.3 9.1 2.1 1 23 441 463 441 463 0.96 2 11 0.11 6.5 7.8 0.5 1 23 470 493 470 493 0.92 3 11 9.9 6.1e+02 1.6 1.0 1 23 497 519 497 519 0.87 4 11 0.00087 0.054 14.3 0.7 1 23 524 546 524 546 0.98 5 11 2.1 1.3e+02 3.6 1.2 2 23 554 576 553 576 0.95 6 11 0.019 1.1 10.1 0.1 2 23 589 611 588 611 0.91 7 11 0.0026 0.16 12.8 1.1 1 20 618 637 618 642 0.91 8 11 0.0023 0.14 13.0 0.3 3 23 718 738 717 738 0.97 9 11 0.15 9.4 7.2 0.9 1 19 744 762 744 766 0.92 10 11 0.0017 0.11 13.4 6.5 1 23 771 793 771 793 0.96 11 11 0.019 1.2 10.1 0.9 1 23 799 822 799 823 0.96
Sequence Information
- Coding Sequence
- ATGTCTAAAACTAAAGTAAAAGTATGTCGAATATGCCTTCGCTCGGACGTTCTCACACGGGATGTTGGTCCATCTCTTAACGATTTCTACGATGAATTATGTGAATACGACAACTACGATAACATGAGCCTACGGTACTGCTTGCTGTGTGAGCACCAGTTACGCAAGTGTTTCCATTTCAAGCAGAGATGCCAGCAAGGCAATACTGTGCTTAAAGCTTGGAGAAAGAAGAAACTATCGCTCTATCCAACTCCTGAGCTTGGCCAACCTATCTTTGAAGCCGGTGCCTCGCACGAATTAACCATTCAGCATGCTCCAACTCCTAAGCTTGGCCAACCTACCATCGAGGCCGGTGCCTCCTATCAGATAGCCATGCAGCACACTCCAACTCCTGAGCTTAGCCAACCTATCTTCGAAGCCGGTGCCTCGCACGAATTAACCATTCAGCACGCTCCAAGTCCTGAGCTTGGCCAACCTACCATCGAGGCCGGTGATTCTAACTTTCCTAAGACCCTCTACAGGCTGCTGCCCCCGTCTCCACTTGACTTCTGCAATGTCACCGCCAGgCACCGAGAGTCAGTATACAAGTATGAGGACGACGGCCCCGTTTTATACAAGGCTGATGACAGGCTGTCAAAGGATGGCAGTGACAGCGAACACGACCCGCAGGAGGACATACCTCTCAGCAACTTCTCTGGGACTCTGCCCGCGAACTTAGAGGTCGATATTAAGGATATAGCAGTGGACTTCAAGAAGGAAGACGACCAGTACTCAGCCTCGGAGGCCAGCGCTGGACCAGCGACCGCCGATGACGATGACGATGATAGTGATATGGAGAACGTAATAGATATCTACATCAAAACAGAAGCAAAGAAACCGACCGGGACGAAATCAAAACACAAAGAGAAAAAAGCAACtctaaaaccaaaaaaatcgGACCCAGAAAGCATATCGCCAAGCGAAAGTAGCCCCTATCTCGAGGACGACAAGCCTCAGAATAGCAAGAAGTATCAGAGCACCAAGCAGAAAGTCGAAGAGATATTAGAAAAGGAAGTTAATGAGCTCGGAGAGAATGTCATGAGTAAAGAAACTTTTCTGAAGATATATGAGAAGTTCTTGCCTTCGGATATGAGGATGTTGTCGCTTAAGAAAGatTCCCAAGGGCAGTACACGAAACTGAAAAAGGCCTTGCAGCATCTCCTGAAGAAATACAACCCGGACTACGAAACTGTTTTCGACATCGAATATCTAGACACAGAGGAAAAGAAACTTGAAGAATTCATACGACGGAAGGATTCAAAGAGCTACACCGAGGCTACGTACAAATGCGAGCTGTGCTATAGAGGCTTTGAGAAACAGACGCAGTACGAGTACCACAATAAATGGCATACGGAATCAGCAGGCGAGTTCAACTGCGGTATCTGCGGAATGCGCTTTCAATCGCTCAAGACACGCGCGAGCCACCGCGCGTCCTCGCACTCCGCCGTCTACACCTGCCGCATGTGTCCGTTAGTCACGTACCACTATCCTGTGATGTTGAACCACTACGAACAACACAAAGGCGTAGAGTACTCCTGCCCAATCTGTCTCAGTGTTTTCGAaaataaaacaacgttCATGAATCACCAGCGAGATCACAACGCGGACAAAAAGAAGTCAGTTTGTACATCCTGCGCTTGCACCTTCATTTCCGATGTTGGACTGATGCTGCACAGGAAGTCTAAACACACGGACACGGTGCCAACCGAATCTGGCCCCCATTCGACGTGTAACGAGTGCAACGTTGTGTTTGATACGCAAGAGGTTTATATGAAGCATGTCGCTCTGTCGCACACTAAGAAGGTTGAATCTCACCGCTGCGCGTACTGCCACATCCGTTTCGCGACCCTCGAGGAGCTCCGCGCACACAAGGTGTCCCAAGGCCACCAGCGAGCCTCCAAGAAGTACGCGCAAAGAACTGCTCGGTCGAACGAGCCCAACCCGGTGAAGAAGATCAAGATCAATACGCCGGACAAGCCGTTTGTCAAGTGTGAGCTGTGCCCAGCGATGGTGTCCACCGCGTTCACATCCTGCATGTACAAGCACTTCCTGAAGGAGCACCCCGACATCCCCTACTCGTCCGTCTACTCGCAGACCGCGCGCCGGCTGCTCTGCCATCTCTGTGGGAAGACCTTTATGGACCCGGCCTTCTTCGCGGACCACGCAAACGTCCACAGCGGCGAACGTCCCTACATCTGCTCCGTGTGTCCAGCCCGCTTCCACACGCGCCGCCACCTCGGGCTGCACGCGCCGCGCCACCAGCCGGCCTCCCACGCCTGCGAACTGTGCCATAAGCGGTTCCACAGCGCGGCCAATCTCTATAACCATAGGAAGACTCACATCGGTGACCGCCGGTTCAAATGCGAGATCTGCCTGAAGGGTTTCCTACACGCCGCGACGCTAAACGAGCACGTGCGGGGCGTACACCACCACATACGGAAACAGAAGAACAGGAAGGAACCATACTAG
- Protein Sequence
- MSKTKVKVCRICLRSDVLTRDVGPSLNDFYDELCEYDNYDNMSLRYCLLCEHQLRKCFHFKQRCQQGNTVLKAWRKKKLSLYPTPELGQPIFEAGASHELTIQHAPTPKLGQPTIEAGASYQIAMQHTPTPELSQPIFEAGASHELTIQHAPSPELGQPTIEAGDSNFPKTLYRLLPPSPLDFCNVTARHRESVYKYEDDGPVLYKADDRLSKDGSDSEHDPQEDIPLSNFSGTLPANLEVDIKDIAVDFKKEDDQYSASEASAGPATADDDDDDSDMENVIDIYIKTEAKKPTGTKSKHKEKKATLKPKKSDPESISPSESSPYLEDDKPQNSKKYQSTKQKVEEILEKEVNELGENVMSKETFLKIYEKFLPSDMRMLSLKKDSQGQYTKLKKALQHLLKKYNPDYETVFDIEYLDTEEKKLEEFIRRKDSKSYTEATYKCELCYRGFEKQTQYEYHNKWHTESAGEFNCGICGMRFQSLKTRASHRASSHSAVYTCRMCPLVTYHYPVMLNHYEQHKGVEYSCPICLSVFENKTTFMNHQRDHNADKKKSVCTSCACTFISDVGLMLHRKSKHTDTVPTESGPHSTCNECNVVFDTQEVYMKHVALSHTKKVESHRCAYCHIRFATLEELRAHKVSQGHQRASKKYAQRTARSNEPNPVKKIKINTPDKPFVKCELCPAMVSTAFTSCMYKHFLKEHPDIPYSSVYSQTARRLLCHLCGKTFMDPAFFADHANVHSGERPYICSVCPARFHTRRHLGLHAPRHQPASHACELCHKRFHSAANLYNHRKTHIGDRRFKCEICLKGFLHAATLNEHVRGVHHHIRKQKNRKEPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700600;
- 90% Identity
- -
- 80% Identity
- -