Basic Information

Insect: Eupithecia dodoneata
Gene Symbol: ush
Assembly: GCA_947044255.1
Location: CAMRHC010000020.1:1552007-1556033[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0079 0.48 11.3 0.2 1 20 119 138 119 140 0.94

2 9 3.2e-05 0.002 18.8 1.6 1 23 175 197 175 197 0.99

3 9 0.026 1.6 9.7 1.2 2 20 226 244 226 246 0.93

4 9 0.022 1.4 9.9 4.1 2 21 487 506 486 507 0.95

5 9 0.0066 0.4 11.6 0.2 3 20 535 552 533 554 0.90

6 9 1.4 83 4.3 0.0 2 23 587 608 586 608 0.94

7 9 0.0043 0.26 12.1 1.2 1 23 614 636 614 636 0.99

8 9 0.08 4.9 8.1 2.5 1 23 675 698 675 698 0.96

9 9 0.066 4 8.4 0.8 2 20 735 753 735 755 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0079	0.48	11.3	0.2	1	20	119	138	119	140	0.94
2	9	3.2e-05	0.002	18.8	1.6	1	23	175	197	175	197	0.99
3	9	0.026	1.6	9.7	1.2	2	20	226	244	226	246	0.93
4	9	0.022	1.4	9.9	4.1	2	21	487	506	486	507	0.95
5	9	0.0066	0.4	11.6	0.2	3	20	535	552	533	554	0.90
6	9	1.4	83	4.3	0.0	2	23	587	608	586	608	0.94
7	9	0.0043	0.26	12.1	1.2	1	23	614	636	614	636	0.99
8	9	0.08	4.9	8.1	2.5	1	23	675	698	675	698	0.96
9	9	0.066	4	8.4	0.8	2	20	735	753	735	755	0.92

Sequence Information

Coding Sequence: ATGGAGTCCGCTATCAGTGCATCAATGATCCTAGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCAATGCCGGGAGAACCTCGTACGCCGAGCTCGGGCGCCGCGTCGCCGGCGTCCGGCGCGTCGCCCCCCGCGTCCACGACCGCGTCGCCGCCGCGCCTTCGCCTCAACACTAGCCTGGCCACCGACCCGGCCTTGGCCCCGACAGCGACGGTCCTGAAACGAGAGCTACCATCGCCGTCTCCGCCGCCTGCGCCGCCGGTAGCCTCCAACACTCCCCAGCCTAGGGATTACCTGGCCGTCGCAGCTGCGGCTTTCCCCGGTCTGTTCCCCGCGGCCGGCCCGCCTGGCTACATCTGCAAACCGTGCGGTATCCGCTACTCGTCTCTCAGCACGCTACAAGCGCACCAGGAGCACTATTGCTCAAATCGCCGGCCGAAAGAAGGCACAGACTCCCCGGCCGATGCCGCGGATGAGTCCAGCGGAGACTCGAAGACGCCACGACCGCCTAACAAGCAGTACCAGTGCACGTACTGCTCCTACAGCGCTGATAAGAAAGTCAGCCTGAACCGGCACATGCGCATGCACTCGTCTTCGCCCGTCAGCAGCGGCACGCCGGCGCCCGCGCCGTCCAACGGCGAGACTGCGGACAGTCCGCCGGCGCCGGATCGCTACTGCACGGACTGCGACATCCGCTTTAGCTCGATAAAAACTTTCCGCGCGCATAAAACCCACTACTGCAGTACGAGGCAGGTGGTCAAAAACACGCCAGCCGTCACGAGAGGAAGCTCAGCGTCAGGCTCCGCGCCACCGTCACCAGGCCCGACCCCGCCGGCTGCAAGTGGCTATGCCCTCGCGCTGCCTACGACACCGATCCTGATATTACCGATAGGGCTGCTCAGCAAAGCTAGCACGCTCCCTGGCACCACGCTACCCGACCCGGACACCCCCTGCTTTCTCCTACCCAACGGAACGTTTCAACCCTTTAGCCACGCGCTGCCGAACTTGCCCACCGATGGGAAAGCAGCTGAGGTGCTCAAATCTGCGAACAGGCCTCGAGAAAACTCAAGAGATGGCGGACAGACGCCGCTGGATCTGAGCATGAGGCGAACCCCAGAATCTGTGACGATAGATGAACATGAGAAAGAGAATAGGATGAGGTCTACGACACCCGAGCAGATCGTATGCGCGCCGTCACTCCCCGGGTCGCCTGGGACTCCGTCGCCTTCTCCACGACGATCGTCTTCCCCAAGCGGAGAGAGCTCGCCGAAACGACGACGACGAAATAGCTCCCGAGGGCCCACTCCGAAACCACCTAGCGTACCCTCCCCGCCCGAAGAGAAGTTTAACCCCGGCCCGCCTGTGCTCCTCCCCCCCGGGCTAGCGATGCGTCTCGCAGCAGAACTGCCTGTGACCGGTGTCTCTCCTCAAATGCTGGTAAAGCAGGGCGTATCCAAATGCAAAGAGTGCAACATAGTTTTTTGCAAGTATGAGAACTACAAAATCCATAAGAGACACTATTGTTCCGCCGGAGGTGGCGAGGATCGGTCGAGCCCCGCGCCGGAGCCCGGCCCTCCGCAGCAGTACCGGCAACTAATCTGCCTAGCTTGCGGGATCCATTTCAGTTCGCTGGATAATCTGACAACGCACCAGAGTTACTACTGCACGAAAAGGGAAACGCGTTCACCGCGCGCCGCTGTTGCCGCAACACCAGTCATTGAGGCTAGAGTGACAACTGGGGCTGAAGGGGGCTGGAAGTGTCCTTGTTGCGACGTGGTGTCTCCTACTGCAGCGGCGGCCCAGCGGCATATGGAGGCCCATGCGGGCGTGAAGGCCTTCCGCTGCACTATATGCCAGTACCGCGGGAACACGCTCCGAGGAATGAGAACCCATATACGCATGCACTTCAATAATAAGAAGCCCGCTGAAATGCAGGAAGAAAGCTACATAGCCTGCGTGCTAGAAGACGACAACCGCGAGGCCACGTCCCCAAGCCCGGCAGCGACTGGTGAACGCATTCATCGCTGCAGCCACTGCGCATACACATCCACCTACCGAGGCAACGTGGTCCGCCACGCGAGACTTGTCCACGCCACGGACGAGCCAGAGGAAGAACGCCCCGACCCATCACCCCCTGTAGTACCCGTCACTGTcgtcgaaataaaaaaagaaccaGGCACGGAGGAAGAAACCCCTAACTACTGCAAAACTTGCGATATATCCTTCAAGTATGTGAATACGTACAAAGCTCATAAGCAGTTTTATTGTaaagcgacgcaggaggctgtggCCAATAATAATGTGCCGGCGCCTAGGGTGAGCGATGCGGCAGTGCTATAG
Protein Sequence: MESAISASMILGEDEEWGNESEAMPGEPRTPSSGAASPASGASPPASTTASPPRLRLNTSLATDPALAPTATVLKRELPSPSPPPAPPVASNTPQPRDYLAVAAAAFPGLFPAAGPPGYICKPCGIRYSSLSTLQAHQEHYCSNRRPKEGTDSPADAADESSGDSKTPRPPNKQYQCTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPAPSNGETADSPPAPDRYCTDCDIRFSSIKTFRAHKTHYCSTRQVVKNTPAVTRGSSASGSAPPSPGPTPPAASGYALALPTTPILILPIGLLSKASTLPGTTLPDPDTPCFLLPNGTFQPFSHALPNLPTDGKAAEVLKSANRPRENSRDGGQTPLDLSMRRTPESVTIDEHEKENRMRSTTPEQIVCAPSLPGSPGTPSPSPRRSSSPSGESSPKRRRRNSSRGPTPKPPSVPSPPEEKFNPGPPVLLPPGLAMRLAAELPVTGVSPQMLVKQGVSKCKECNIVFCKYENYKIHKRHYCSAGGGEDRSSPAPEPGPPQQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRAAVAATPVIEARVTTGAEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICQYRGNTLRGMRTHIRMHFNNKKPAEMQEESYIACVLEDDNREATSPSPAATGERIHRCSHCAYTSTYRGNVVRHARLVHATDEPEEERPDPSPPVVPVTVVEIKKEPGTEEETPNYCKTCDISFKYVNTYKAHKQFYCKATQEAVANNNVPAPRVSDAAVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00662644;
90% Identity: iTF_00663582;
80% Identity: -