Edod001474.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000005.1:1186254-1198531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.18 11 7.0 1.9 1 23 92 115 92 115 0.89 2 13 0.18 11 7.0 1.9 1 23 118 141 118 141 0.89 3 13 0.82 50 5.0 0.3 1 23 145 167 145 167 0.96 4 13 0.21 13 6.8 4.3 5 23 175 194 172 194 0.95 5 13 0.016 0.99 10.3 0.6 1 23 198 221 198 221 0.94 6 13 0.014 0.88 10.5 0.1 3 23 236 257 234 257 0.95 7 13 0.016 1 10.3 0.1 3 23 270 291 269 291 0.95 8 13 0.016 0.99 10.3 0.1 3 23 304 325 303 325 0.95 9 13 6.9e-05 0.0042 17.8 0.2 3 23 337 358 335 358 0.95 10 13 0.00027 0.016 15.9 3.5 1 23 405 427 405 427 0.97 11 13 0.023 1.4 9.9 0.0 1 23 433 455 433 455 0.96 12 13 1.3e-05 0.00079 20.1 1.4 2 23 460 481 460 481 0.97 13 13 0.0042 0.26 12.2 0.8 1 23 487 510 487 510 0.94
Sequence Information
- Coding Sequence
- ATGTCGGCTAGGATTTGTAGACTTTGTCTAACCATCGACGAACCCCTAGAACAGTTAAATACAAAGCTATTGGGGCATTACAAAACCTTCTGCAAGTACGAGgatagatgtactGTACATGTTTGTCTCACAGATGCTAGGGCGGAGCTCCAATCCCGTCTCTCGTCGGAGCCCTATACATCTGCCAAGTACCGCTGCGAGCGTTGCTACACGGTCTACAAGTGTGAGAAACTGCTGCAGTTCCACATGAAGTGGCATGATTCACAAGCAGAGTTCGAGTGCGACATCTGCCGAATGCGCTTCGCAACTAAGAAGGCGGAGCGGGTGCATCGCGCTAAATGTCACCGCGAGTTCGAGTGCGACATCTGCCGAATGCGCTTCGCAACTAAGAAGGCGGAGCGGGTGCACCGCGCTAAATGTCACCGCGGGAAGTATTCCTGCAGGCTGTGTCCACTGGTCACTTACTACGGttctgCGATGAAGGCCCATTTTGAGAAGCACCAAGGGAAAACACATAAATGCCACTGCGGCGCTGTCTTcaaGCACATCTCATCGTACTTAAGCCACGCGCGCACGGCGCACGTGTCCGCGCACGCATGCGTCACGTGCGCGCGCACCTTCGTGTCGCAGCTAGGCCTGCGCAACCACAGGATCAGGGCCCACCAGacTCGTTCGTTAGAGGACTCCGCAGCCGGTGGCATGGCGTGCTCTCTGTGTGAGCTCACGTTCCCGAACCAACGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTGAGCCAGGCTGCCAACGACATCGGCGTGGCGTGCTCTCTGTGTGAGCTTACGTTCCCGAACCAACGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTGAGCCAGGCTGCCAACGACATCGGCGTGGCGTGCTCTCTGTGTGAGCTCACGTTCCCGAACCAACGAGTGCTCAACGTGCATGTACTCAGCATGCACAAACTGAGCCAGGCTGCCAACGACATAATCGCGTGTCGCTACTGCGGCTTACCATTCGACACTCAGGCGCAACTCAAGGCGCATAAGAGAGAGAAACATCCGCGGAAGGAAGACGCCAATGATATGATAACTTGTAAACTGTGCGGGGCAGTCGGCGCGGGCCGGACGTGGCGCTACCGCCACTACTGTCAATGTCACCCGCACGTCGACTACCGCACTGTCAGCGACGCGGCGCGGCACATGTGCGACCAGTGCGGGAAACTGTTCACTAATGTAACCTGCCTCAAGGACCACATGAACGTGCACCTAGGGCTGCGCCCCCACGCGTGCGGCGTGTGCGGCGCTACTTTTGCTTTGGGGGCAGCTTTGGCGCAGCACAGGCAGCGGCACGCCGCGCCCCGTGTCTGCACGCACTGTCAAAAGGAGTTCCGAAGCACGGCCAACTACGCTGTTCACATGAGGATACACACAGGCGTCCGCCGCCACATCTGTCCGGTATGCTCTAAGGCCTTCCTACACCGCGCCTCGCTGAGGGAGCATGAGAGAGGCGTGCACCGCAGCGAGCGACGAGACAGGAAGCGGCTCACTGTAGACACTAGCTTATAG
- Protein Sequence
- MSARICRLCLTIDEPLEQLNTKLLGHYKTFCKYEDRCTVHVCLTDARAELQSRLSSEPYTSAKYRCERCYTVYKCEKLLQFHMKWHDSQAEFECDICRMRFATKKAERVHRAKCHREFECDICRMRFATKKAERVHRAKCHRGKYSCRLCPLVTYYGSAMKAHFEKHQGKTHKCHCGAVFKHISSYLSHARTAHVSAHACVTCARTFVSQLGLRNHRIRAHQTRSLEDSAAGGMACSLCELTFPNQRVLNVHVLSTHKLSQAANDIGVACSLCELTFPNQRVLNVHVLSTHKLSQAANDIGVACSLCELTFPNQRVLNVHVLSMHKLSQAANDIIACRYCGLPFDTQAQLKAHKREKHPRKEDANDMITCKLCGAVGAGRTWRYRHYCQCHPHVDYRTVSDAARHMCDQCGKLFTNVTCLKDHMNVHLGLRPHACGVCGATFALGAALAQHRQRHAAPRVCTHCQKEFRSTANYAVHMRIHTGVRRHICPVCSKAFLHRASLREHERGVHRSERRDRKRLTVDTSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00701473;
- 90% Identity
- -
- 80% Identity
- -