Edod019694.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000135.1:1545070-1555855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.7 1.6e+02 3.3 1.8 1 23 272 294 272 294 0.95 2 10 9 5.5e+02 1.7 0.0 6 23 324 342 324 342 0.84 3 10 0.00054 0.033 15.0 1.4 1 23 364 386 364 386 0.98 4 10 0.0006 0.037 14.8 1.3 1 23 390 413 390 413 0.98 5 10 0.0015 0.091 13.6 1.2 1 23 418 441 418 441 0.94 6 10 0.15 9.1 7.3 1.0 1 20 447 466 447 470 0.79 7 10 1e-06 6.3e-05 23.5 2.1 1 23 477 500 477 500 0.97 8 10 0.00011 0.0067 17.1 1.8 2 23 507 528 507 528 0.97 9 10 3.7e-06 0.00022 21.8 2.3 1 23 534 556 534 556 0.98 10 10 6.1e-05 0.0037 17.9 2.0 1 23 562 584 562 585 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATGAATTAGAAGACAGATACACATATGGAGAGTGTCGATGCTGCCTCGAAAGAGGCCACCACAGAGAAATCCTAGAAGAATACTATTTCAATGGAGTACGCGAAGTCTATTACGATATGTTCAACGAAACCTTTAATTTACTACTATCCCGCTCGACCCTGCTCTCCACGTTACTGTGCGCGCGCTGCGTGACGCGGCTGCGCGATGCACGCGCACTGCGCGCTCAGGCGCAGGACAGCGAGAGACTGCTGGCCGCTAGGGACCAGCAGATGCTGTTTGTAGATGTGCCGACGGAATCCCCCATACTGGACATAAAGCAGGAAGTGTCCGTGAAGGTGGAACCGGAGGATGATCTCGAAGAGTACGGGTTCATAGAGGCCGACGAGTTAGCACAGGACATACAAGAGAAATCTGAACCATCCGGGTCCGATTCAGACTCAGACCTGGTCCGGGGCGAGGCAGCGCTCCTGGCTCGCTTCAAATCAGTCCCACGGTTGCCCACGCAGAAATCTGAACCATCCGGGTCCGATTCAGACTCAGACCTGGTCCGGGGCGAGGCAGCGCTCCTGGCTCGCTTCAAATCAGTCCCACGGTTGCCCACGCGTGCGGATCTACCCCACGCCTTCACACAACAACTGGACATGTTAGCTCACGTAAACATCGACTCTCGCTCCATCTCAGTACGAACTCCGTCGCCGGACAGCGCCCTCTCTGGGCCAAACGAGAAAGCAGCGCACATTACCAACGTCACAGCATTGCTGCGTCACAGCAACATGACGCCTTTCCGCAGCAAGCACCGCAGCGGGTACCCGTGCTTCTACTGCCGAGTGATGCACGATGACTTTGACGCTCTCAGAAAACACTCTCGCCTCCACACCGAAGACGATCTAGCTCGAGTCCTCAAACAAACCAGCGCGGAAAGCATCATCGTCTACGCGGATGTGACGTCACTGCGCTGCGCGTGCGGTCTCGATCTACCATCAATAAACGAACTGAAGATCCACATCCGGGATCAGCACAACGTGGCGCTGGTGACCAGCGTCACTGACCGCGTGGTGCCATTCGTGATACAAGGAGACAGATACACGTGCCCGCTGTGCTCTTGTAAGTTCGTAACGTTCGGGTCCGTGGAGCGCCACATGAACGGACACTACCGGAACTACGTGTGCCAGCACTGCGGCGGCGGCTACGTCTCTAAATACAGACTGAAAGTCCACCAGAAGAGTTTGCACCAGGAGGGATGCTTTCCCTGCGAGGAGTGTGGCAAGGAGTTCTCCAGCCTCCAGAAACACAAGAACCACGTCAACACGGTGCACCGGATGGTCAAGAgGTTCAAATGCCCTAAATGTCCGGAGCGGTTTGGAGAATACTTCCGGCGCCAGCGCCACCTGGTGGAGACACACGGCGCAGCGCCGCTGCGGTATAACTGCAACGTTTGCGACAAGTCGTTCGACCGCCGCTACACTCTCTCGCGGCACTTGAAGAGAGACCATTTGGAGGAGAGAGAGAATGAGTGCAACATCTGCGGGTACAGATGCTACACAAAGAACGAGCTGAAAGTCCACATGGTGAAACACAGCGGCGAACGCGTTCACGAATGCTCCGTTTGCAAAAAGGCATACGCGCGTAAGAAGACGCTAAAAGAACACATGAGAATACACAACAACGACCGGCGGTTCGTTTGTCCAGCGTGTGGACAGGCCTTTGTCCAGAAATGTAGTTTGAAGGGACATCTAAAGACGCATCATTTTGAATATACACTTCCAtga
- Protein Sequence
- MENELEDRYTYGECRCCLERGHHREILEEYYFNGVREVYYDMFNETFNLLLSRSTLLSTLLCARCVTRLRDARALRAQAQDSERLLAARDQQMLFVDVPTESPILDIKQEVSVKVEPEDDLEEYGFIEADELAQDIQEKSEPSGSDSDSDLVRGEAALLARFKSVPRLPTQKSEPSGSDSDSDLVRGEAALLARFKSVPRLPTRADLPHAFTQQLDMLAHVNIDSRSISVRTPSPDSALSGPNEKAAHITNVTALLRHSNMTPFRSKHRSGYPCFYCRVMHDDFDALRKHSRLHTEDDLARVLKQTSAESIIVYADVTSLRCACGLDLPSINELKIHIRDQHNVALVTSVTDRVVPFVIQGDRYTCPLCSCKFVTFGSVERHMNGHYRNYVCQHCGGGYVSKYRLKVHQKSLHQEGCFPCEECGKEFSSLQKHKNHVNTVHRMVKRFKCPKCPERFGEYFRRQRHLVETHGAAPLRYNCNVCDKSFDRRYTLSRHLKRDHLEERENECNICGYRCYTKNELKVHMVKHSGERVHECSVCKKAYARKKTLKEHMRIHNNDRRFVCPACGQAFVQKCSLKGHLKTHHFEYTLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00703329;
- 90% Identity
- -
- 80% Identity
- -