Edod002322.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000009.1:2244980-2254028[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.1e-05 0.0013 19.4 2.5 1 23 307 330 307 330 0.97 2 10 0.32 19 6.3 7.0 1 23 337 359 337 359 0.97 3 10 8.4 5.2e+02 1.8 0.1 1 11 363 373 363 381 0.84 4 10 0.00025 0.015 16.0 4.4 2 23 391 412 390 412 0.97 5 10 0.0004 0.025 15.4 0.3 1 23 416 439 416 439 0.97 6 10 0.2 12 6.9 0.1 2 19 453 470 452 472 0.92 7 10 0.0004 0.024 15.4 1.8 2 23 505 527 504 527 0.92 8 10 0.00056 0.034 14.9 0.0 2 23 546 567 545 567 0.97 9 10 0.00011 0.0067 17.1 1.1 1 23 573 595 573 595 0.98 10 10 5.4e-05 0.0033 18.1 5.7 1 23 601 623 601 623 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAGGACAAATTCTGTCGGATATGCGTTCGCAAAGATGTGAAAATGTATGAATATAATCGATTCCACTTGAAgcaattttataaagaaattacCGGATCGAagGTTTCGAACCGGGATTGCCTTCCGAAATGGTTCTGTTTTGAGTGTGCAGCGCTATTGCATAAATTCCATGAATTCAAGAAGAAATGTCACAATGGACAgaatatcttcaaaaaacttctTGAGTCGAAAAGCACAACCAGGAACAATTTTAACAGATACAGCCAATTACCATATCTACAAATAATATCAGTCCATACCAACAATAGTATTAAAACATATACAATAAAACAcggggaaataaaacaaagtatatCACAAAAGAATTTTACTGAGGTTTATGTTGATGACTTGAAAATCATTGAATTTAACTTGAGatctaatgataatgatgaagcaAGAAATGATAAGCCTATAGAACACAATGATGATGACATTGACAGTGATATTGATAATGATAGTCTGTTTTCTACTGGAAATGCAGAAAATGATGAGGAATTTAAAATGAACATAGCAGATAAGCAAACCAAACATAgaattacaaattatactgaAGGAATAACAAATGAACTTGATAGTGACGAAAAACCAAATATATTTGACGAAAAAACAGGCAATTTCGTAACAGATGATGAAATAGAGAAAgaacaaacatataaaatagACAACTCAATAATCAAAGAAAGAATCAAATCAGAaacagatataataaataaatcaaatctagAATCTAACCTTGTAAATAAATTCCAAAGATCAGTGAAAAAGAAATTTCTTGATGAGAATCATtggaataaaataactttaagtGACGAGGAAGCTTCTAGAAGGTTTCAAGCGAAGGCCTTAGAACAGAAGTACATAAGGGCTGATTTTAAATGTACTGATTGTTATAGGACATTTTCTCAGGAAGATATGATGAAACGGCATATTAAGTTGAGGCATTGTGAATCCCTAGGCCCCCACGAATGCCGGCACTGCCGCATGCGCTTCAAGTGGAAGTCCCGGCTACAGAAACATTTGAAGGAGCACTACACCATCTACAAGTGCCTTAGATGTGAACTTTCCTTTCCTGTTGAAATTTCTGCATTCCAACACGATTATTCCCACAATGGCGTTACTTGGACATGTGCGCATTGCGGACAAGGATttcgGCACAGTTCCACCTACTACACACATCTTCGGAAGCACAAGAGTAAATACGTGTGTACCCTCTGCGGGGTCTCGTTCGTCAGTGAATTCGGACTGTTTATGCACAAGCGGGTCAAGCATGTTATCACtgaggatTTTAAAGAAGAAAGTTCCAATACGTACTGCAATGTGTGTGATATAAAGTTTGATACGCTAAAGGGCTACGAAGATCACTTCGCAGAGTCTGCTTTACACGTGAcTGAAGTGTCGGAAGGCGCGACCAGTCTACCTCTGAAGAGCAGATGCACTAAGAAAAGAGTTCCGAGGATAGCTACTACTTGTAATATTTGTGGCCGTGCATTCTCCACCTACGCTGCGTTCAGCAAGCACCATGCGCACGCGCACCCCGACTCGCCGCTGCTGCCCAAGACCAAAGACAAGCACAACGGACAGAGACTAGTGTGCGAAGTATGCGGCATCACACTCGCGAGTTCGTGGTCGCTGCTAAACCACCTCAACACGCACTCCCGCTCCCACCGCTTCACCTGCAAGACGTGTGGCCTCCAGCTCAGCTCCAGAAGTGTACTACAGAGGCATCAGCTGACCCACGGCCACGAAAAGAGTTTTGTGTGTGACCGTTGCCACAAACGGTTTAATCATCGCAACGGGCTCAGAGTTCATCTACGCACACATGAGAAGGAACGAGACAGTCCTGGCAGAAAGAAAGAGACGCAACATGTCATGGATTACTTCAAACATTATGGCCCTTTAGGAAATAACTATGGTTATGAGGCTAAAAAACTCTGA
- Protein Sequence
- MSEDKFCRICVRKDVKMYEYNRFHLKQFYKEITGSKVSNRDCLPKWFCFECAALLHKFHEFKKKCHNGQNIFKKLLESKSTTRNNFNRYSQLPYLQIISVHTNNSIKTYTIKHGEIKQSISQKNFTEVYVDDLKIIEFNLRSNDNDEARNDKPIEHNDDDIDSDIDNDSLFSTGNAENDEEFKMNIADKQTKHRITNYTEGITNELDSDEKPNIFDEKTGNFVTDDEIEKEQTYKIDNSIIKERIKSETDIINKSNLESNLVNKFQRSVKKKFLDENHWNKITLSDEEASRRFQAKALEQKYIRADFKCTDCYRTFSQEDMMKRHIKLRHCESLGPHECRHCRMRFKWKSRLQKHLKEHYTIYKCLRCELSFPVEISAFQHDYSHNGVTWTCAHCGQGFRHSSTYYTHLRKHKSKYVCTLCGVSFVSEFGLFMHKRVKHVITEDFKEESSNTYCNVCDIKFDTLKGYEDHFAESALHVTEVSEGATSLPLKSRCTKKRVPRIATTCNICGRAFSTYAAFSKHHAHAHPDSPLLPKTKDKHNGQRLVCEVCGITLASSWSLLNHLNTHSRSHRFTCKTCGLQLSSRSVLQRHQLTHGHEKSFVCDRCHKRFNHRNGLRVHLRTHEKERDSPGRKKETQHVMDYFKHYGPLGNNYGYEAKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00703335;
- 90% Identity
- -
- 80% Identity
- -