Edod001476.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000005.1:1215166-1224599[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.14 8.5 7.4 1.5 1 23 87 110 87 110 0.90 2 16 0.85 52 4.9 2.0 1 23 114 136 114 136 0.97 3 16 2.5e-05 0.0015 19.2 4.3 1 23 141 164 141 164 0.97 4 16 0.022 1.3 9.9 0.7 1 23 168 191 168 191 0.96 5 16 0.03 1.8 9.5 0.4 2 21 204 223 204 228 0.93 6 16 0.0028 0.17 12.7 0.0 3 23 238 259 236 259 0.95 7 16 0.017 1 10.2 0.3 2 23 279 301 278 301 0.94 8 16 0.16 9.9 7.2 0.2 3 15 319 331 317 344 0.85 9 16 0.66 41 5.2 0.1 3 15 362 374 361 387 0.87 10 16 0.16 9.9 7.2 0.2 3 15 405 417 403 430 0.85 11 16 0.66 41 5.2 0.1 3 15 448 460 447 473 0.87 12 16 0.16 9.9 7.2 0.2 3 15 491 503 489 516 0.85 13 16 0.0012 0.071 13.9 1.2 3 23 534 554 532 554 0.89 14 16 0.0031 0.19 12.6 2.4 1 23 560 582 560 582 0.92 15 16 2.8e-07 1.7e-05 25.3 1.5 2 23 588 609 588 609 0.97 16 16 0.0016 0.098 13.5 1.4 1 23 615 638 615 638 0.96
Sequence Information
- Coding Sequence
- ATGTTGAGGGATATGGATCAAACAAATCCAAAGAAGGAAAAGCATCGAAAGCCCCTAAAGGACCTTCAGGAATACGAAAGCGTGTTCGACATCCAACTCTTCAGAACCGATGCTGAGATCCAACGCGAGTTTGCGGCTAGGAAGACTTCTCCTAGATATTTGGATGCACCACACAAATGTGATATCTGCTACACCGTGTACAAGTGCCAGAAGCTGGCTGATTTCCATATGAAGTGGCATCTCCCTTCAGCGGGGGACTTCCCTTGCGACTTTTGTGCTATGCGTTTCAAGACCCACCCCGCGATGCGCAAACACAAGACTGATGTACATTTCGGAAGGTTTGCTTGCAAGAAGTGTCCTCTCATCACGTATCACAAaaTGGTCATGATTCTACACTACAGAAAACACCAAGGCGTTAGTTATGCCTGTAAAATATGCAGCAAGACTTTTAAccaCAGTTCGACCTACATGTCTCACCTCCGCAAGTCCCACCGCACTGAGCATGTGTGCGTGACCTGCGCGCAGACCTTCGTGTCAGAAAAAGGACTCTCAGTGCATCGGAAGAAGGTCCATAATGCTTCTAGCAAGGTGGATGCTACCGGCACGGCTCGCTGCTCGCAGTGCGACCTGACCTTCGCGAACCAACAAGTCTACACGGTGCATCTCATGAACACCGACAAACATAAGGACAAAGCTGAGGCGATTATAGCGTGCCCGGAATGCGGGATCGAGTTCCCGGACAAGCTGGCGGTGCGCGCGCATCGCCGCGAGCGCCACCCGCAGTACAACTTCAGCGCGATGAAGCGGGCCGAGAGCGGACAGCCGCTGGGACAAGTCTGTCCCTTGTGTGGTGCATCGGGAACACACAACACGTGGCTGTACCGCCACTTCCTGGTGTCCCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCGGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCCCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGGCGGAAAGATCTCTGTGGCCTGTGCGGGAAAAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCCCACCCCACGCACAACTACAAGCAATGCGTGGCCAGCATGCGGCGGAAACATCTCTGTGACCAGTGCGGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCCCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGGCGGAAAGATCTCTGTGGCCTGTGCGGGAAAAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCCCACCCCACGCACAACTACAAGCAATGCGTGGCCAGCATGCGGCGGAAACATCTCTGTGACCAGTGCGGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCCCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCGGGAAGAGTTTCTATAATATAACACAGCTGAAGGAACATGCGTTCGCGCACGCGGGGATCAAGCCGTTCCGCTGCGACCAGTGTCCCGCCGCCTTTAGCTCCAAGTCACATCtcaagTTTCATTCGGAACGgcacgcgccgccgcgccgcgaaTGCTCGCACTGCGGGAAAAAGTTTGTTAGCGCTGCCAACCTGTCTAACCATATGAGGTCCCACATCGGCGACCGTCGGTACAAGTGTACCCTCTGCGGCAAAGGGTTTCTACACTGCGCAGCACTGCGGGAGCACGTTAGAGGGGTGCATTTACACATACGGAGGCAGAGGAAATGCAAGTGA
- Protein Sequence
- MLRDMDQTNPKKEKHRKPLKDLQEYESVFDIQLFRTDAEIQREFAARKTSPRYLDAPHKCDICYTVYKCQKLADFHMKWHLPSAGDFPCDFCAMRFKTHPAMRKHKTDVHFGRFACKKCPLITYHKMVMILHYRKHQGVSYACKICSKTFNHSSTYMSHLRKSHRTEHVCVTCAQTFVSEKGLSVHRKKVHNASSKVDATGTARCSQCDLTFANQQVYTVHLMNTDKHKDKAEAIIACPECGIEFPDKLAVRAHRRERHPQYNFSAMKRAESGQPLGQVCPLCGASGTHNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCGKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKDLCGLCGKSFYVRTLYNTWLYRHFLVSHPTHNYKQCVASMRRKHLCDQCGKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKDLCGLCGKSFYVRTLYNTWLYRHFLVSHPTHNYKQCVASMRRKHLCDQCGKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCGKSFYNITQLKEHAFAHAGIKPFRCDQCPAAFSSKSHLKFHSERHAPPRRECSHCGKKFVSAANLSNHMRSHIGDRRYKCTLCGKGFLHCAALREHVRGVHLHIRRQRKCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -