Basic Information

Insect: Eupithecia dodoneata
Gene Symbol: -
Assembly: GCA_947044255.1
Location: CAMRHC010000135.1:618453-621450[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.17 11 7.1 6.2 1 23 62 85 62 85 0.95

2 15 0.00097 0.059 14.2 0.5 2 23 115 137 114 137 0.96

3 15 0.026 1.6 9.7 4.2 1 23 160 183 160 183 0.97

4 15 0.078 4.8 8.2 0.2 2 23 189 211 188 211 0.93

5 15 6.6e-07 4e-05 24.1 0.3 1 23 215 238 215 238 0.97

6 15 0.029 1.8 9.5 0.8 2 23 244 266 243 266 0.94

7 15 0.17 11 7.1 4.7 1 23 271 294 271 294 0.98

8 15 0.6 36 5.4 5.5 1 23 383 406 383 406 0.98

9 15 0.0013 0.078 13.8 5.0 1 23 477 500 477 500 0.96

10 15 2.2e-07 1.3e-05 25.6 0.5 1 23 505 528 505 528 0.97

11 15 0.86 53 4.9 0.2 2 23 534 556 533 556 0.87

12 15 0.011 0.7 10.8 0.7 2 23 562 584 561 584 0.96

13 15 0.051 3.1 8.7 2.4 1 23 588 611 588 611 0.97

14 15 0.01 0.62 11.0 0.7 2 23 618 639 617 639 0.97

15 15 2.2e-07 1.4e-05 25.6 0.5 1 23 645 667 645 667 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.17	11	7.1	6.2	1	23	62	85	62	85	0.95
2	15	0.00097	0.059	14.2	0.5	2	23	115	137	114	137	0.96
3	15	0.026	1.6	9.7	4.2	1	23	160	183	160	183	0.97
4	15	0.078	4.8	8.2	0.2	2	23	189	211	188	211	0.93
5	15	6.6e-07	4e-05	24.1	0.3	1	23	215	238	215	238	0.97
6	15	0.029	1.8	9.5	0.8	2	23	244	266	243	266	0.94
7	15	0.17	11	7.1	4.7	1	23	271	294	271	294	0.98
8	15	0.6	36	5.4	5.5	1	23	383	406	383	406	0.98
9	15	0.0013	0.078	13.8	5.0	1	23	477	500	477	500	0.96
10	15	2.2e-07	1.3e-05	25.6	0.5	1	23	505	528	505	528	0.97
11	15	0.86	53	4.9	0.2	2	23	534	556	533	556	0.87
12	15	0.011	0.7	10.8	0.7	2	23	562	584	561	584	0.96
13	15	0.051	3.1	8.7	2.4	1	23	588	611	588	611	0.97
14	15	0.01	0.62	11.0	0.7	2	23	618	639	617	639	0.97
15	15	2.2e-07	1.4e-05	25.6	0.5	1	23	645	667	645	667	0.97

Sequence Information

Coding Sequence: ATGCCGTGCGAGCTAATATCCGCCACTCGTGCGGATATTttccctgtagGTATCATAGTGCCTGTGATGGAGATTGAAGATCAAACAAAGGCCGATAAACTCTCGGGCGACAAAATAAGACAGAACATAGCGTGTATACTCAATCACACCACCGCAGTCCCGTTCTGGTATAGAAACAACAACTTTAACTGTCTGTTCTGCGAAAAATCCTACCCTCAATGCTATTTGCTTCACAATCACTACCAAAACAAACACTCAATGGTCGATTTGGACGAAAACCATCCAATACTAAAGAGATATAGACAGAACAACACGTTTCTCAGACTAAACATAGTTAATCTGACTTGTAAAATCTGTTTCCAATCTTTTGAAACTCTAGACGGAGTAACAACCCATCTAAAGACAGACCACGATCTTAACTTCGATACAAAAGTCACTAATAACCTTATAGAGACATTCAAGCTTACGAACGAAACACACACCTGCCATATTTGCAAGGAAGAGTTTAGCTATTTCAAAATCCTCGTCATTCATATGCGGAAGAATCACGCAATAGGCGATATAGTTTGCAAATTATGCGACAGGAGGTTTCTAAGGAAACCAGAGTATGTTGCTCATAAAATATCAGAACACGGCCCTGGTTATAACTGCGAGGATTGCGGCAGAGAGTTCAACAGCAAAGTTCAACTCAAAGCCCATATAAATAAAGATCACAATGCGTTCAAGTTAAAATGCTTTGAATGCCGTGAAGAGTTTCAGTCGCCTTATAAAAGGAGGAAGCACATGATATTAGCTCACACGGCATCTTCGTACCCGTGTAGTCTTTGCGAGAAGTTGTTTACTTGTTCCTCGCATAGGAATATTCATATAAGGAAGTCGCATTTAAATGAGAAGAAAGGAAAGAGTATGACACCCGAAAAGGATCATCTTAGGGAAAAGGTAATCGTTTTGGATGACGCAGGACTTAATTTAAGCGTCGAACAATATATTACTGAAGGTAGCCTCTTAGACTCAGCCAAAAACAGTAAAAATGATCCGGATAATCAGATAATACAAAAAAAGCAATCAGTAAAAGATCTCAGGAAGGATATTGCTAATTTTATCAACTTGACCAACGCCATTCCCTTTAAATTCTTCCGCAATAGATTCAGATGTTTCTACTGTTCAGACGAATTTGATTTATGCGATCATCTAAAAGACCACACGAGAAAAATTCATCCAATATGTGAAGTTACCTTCCGTGCTATGAAGCTGCGGGGTAGATTTACTGGCGttaaaatcaaaatagacaCGTCTTCTTTAAGCTGCAAAATGTGCTTGCAGCAAATCACCGATTTTGATTCAGCTGTTGTTCATTTAGAAGAAAAGCATAATACCATCGTGAACAACTTAGGCATCCTTCAACCGTTCAAACTTATACACGACGAGTTTTCTTGCCCTAAGTGTCACTTGAAGTTTAGGTCGTTCAGTACTCTATTGAAGCATTTTAATTCTTCCCATCCTGGCAACAGATACATCTGTTCTGACTGCGGTAAAGCCTTCGCCAGTTACTCCAATCTGAAGACTCATATCTCACGGTATCACTCTATAGCGACAAATAAATGCCCCAACTGCAATCTAGTTTTCCTTACGGGTCAGGATGTAAAATTACATATGGGGAAAGCGCACGGCAGTAAAGTCATAAAGTGCCAGAAATGTGCAGAGAAATTTGGAACGCAATACCAGAAGATGAGGCATATAATTAAGATACACAATGGCGGACACAAATGTCCGTATTGCGCTTCAGTGTTTATCAAATACTCCTTTATGTCGAACCATGTAAGGAGGTCGCATCTCAAAGAGAAGAATGTCAAATGCTCTGTCTGTAGCTTGAGATTCTTCGACGAGACTAGATTGAAGGTACACATGGTAAAACATGTGAGTGGTAAAGAGTTTAGGTGTGATTACTGTGGGAAAGCATTTATTCGGAGAAAGAATCTGGTGACGCATATGGCTTTGCATCGGAAGAACGACGTAGGTTTGCTCTGA
Protein Sequence: MPCELISATRADIFPVGIIVPVMEIEDQTKADKLSGDKIRQNIACILNHTTAVPFWYRNNNFNCLFCEKSYPQCYLLHNHYQNKHSMVDLDENHPILKRYRQNNTFLRLNIVNLTCKICFQSFETLDGVTTHLKTDHDLNFDTKVTNNLIETFKLTNETHTCHICKEEFSYFKILVIHMRKNHAIGDIVCKLCDRRFLRKPEYVAHKISEHGPGYNCEDCGREFNSKVQLKAHINKDHNAFKLKCFECREEFQSPYKRRKHMILAHTASSYPCSLCEKLFTCSSHRNIHIRKSHLNEKKGKSMTPEKDHLREKVIVLDDAGLNLSVEQYITEGSLLDSAKNSKNDPDNQIIQKKQSVKDLRKDIANFINLTNAIPFKFFRNRFRCFYCSDEFDLCDHLKDHTRKIHPICEVTFRAMKLRGRFTGVKIKIDTSSLSCKMCLQQITDFDSAVVHLEEKHNTIVNNLGILQPFKLIHDEFSCPKCHLKFRSFSTLLKHFNSSHPGNRYICSDCGKAFASYSNLKTHISRYHSIATNKCPNCNLVFLTGQDVKLHMGKAHGSKVIKCQKCAEKFGTQYQKMRHIIKIHNGGHKCPYCASVFIKYSFMSNHVRRSHLKEKNVKCSVCSLRFFDETRLKVHMVKHVSGKEFRCDYCGKAFIRRKNLVTHMALHRKNDVGLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -