Edod019705.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000135.1:1643809-1649987[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.39 24 6.0 0.1 3 23 289 310 287 310 0.86 2 19 0.14 8.6 7.4 1.1 2 23 381 402 380 402 0.91 3 19 0.00088 0.054 14.3 0.1 3 23 408 429 407 429 0.96 4 19 4.7 2.9e+02 2.6 0.0 5 21 437 453 435 454 0.90 5 19 3.3e-05 0.002 18.8 0.4 2 23 462 484 462 484 0.96 6 19 0.069 4.2 8.3 2.9 1 23 491 514 491 514 0.93 7 19 1e-05 0.00062 20.4 3.5 1 23 518 540 518 540 0.99 8 19 0.024 1.5 9.8 1.4 2 23 852 873 851 873 0.94 9 19 0.00021 0.013 16.3 1.5 1 23 877 900 877 900 0.96 10 19 2.5 1.5e+02 3.4 0.1 3 21 906 924 905 925 0.95 11 19 2.7 1.7e+02 3.3 0.1 2 23 1012 1034 1011 1034 0.93 12 19 0.08 4.9 8.1 1.2 2 23 1055 1076 1054 1076 0.93 13 19 4.2e-05 0.0025 18.5 0.6 1 23 1080 1103 1080 1103 0.97 14 19 0.049 3 8.8 3.6 1 21 1110 1130 1110 1131 0.92 15 19 0.023 1.4 9.9 0.4 1 23 1138 1161 1138 1161 0.93 16 19 0.048 2.9 8.8 4.3 1 23 1168 1191 1168 1191 0.92 17 19 0.015 0.9 10.5 1.1 1 23 1196 1218 1196 1218 0.95 18 19 1e-05 0.00064 20.4 1.3 1 20 1224 1243 1224 1246 0.95 19 19 0.00027 0.016 15.9 4.2 1 23 1252 1275 1252 1275 0.98
Sequence Information
- Coding Sequence
- ATGTACGATATCTTTCACACATCCCGGCATAAGAACTCGGCGCTTTCTTTTCTAGATGAAGAATGGACGAGCACTGAGGTGAAGATAGAGTTTCCTGTTGCATTCAAAAATAGCAACGATGGTACTAATGAATGGATCACGACCGATTCAGCGGATCATGTCAATATCGATGTAACTAATGTCAAACAAGATAATTGTAAAACCGTAGATGACGAGTGGGTTATATTCCCGCTCAATGCTGCAGAACAACCGCCTGTACAACCAAACTTATGTCTAGACGAAGACGGCGCCGAGTGGATAATCACTGATGCCGTAAAGGTTACAGACACTGTCCAGAATAACCTTGATTCCAATAACATACGAACTATGACACATCAACAAAATATACGTTGCGTTTCGAATCCTGCGCCGAACGTTTCAAAAACCGGCGAGCTCGTTTCTAAATTGACACGAACTGTGAGTgatcaacaaaataatatggTAGGATATCGATTCGTCTCAGAACTTGCGTCAAAACTTGATAAACCTTCTGCTAAATTGACGCAAAATTCGACACATGAAATCGTAAAAGGATATCGGTTCGTCTCAAACCCTGCGCCAGCCATTTCAGAAGTTGACAAGTTGAAATTAAAAGGCTATCGGTTCGTCTCAAACCCTATGCCAGCCGTTTCAGGAGTTGACCAGTTGAAATGGAATCGCGTTCGCGTTCAAGGAGCTGGTGAAATGTGGCTAAAGTCGTCCAAAAGACCCAGACCCTTGCTAGATACAACGAGCCTTAGCAAAGCAGATCAAAACGCCGTGCTCTTACTGCGTAACACTACAGCAATCCCATATAGAATAGAGAATGTTAGATCAATTATACCATGTTTTGCTTGTGGGTATAAATTTATTGACCCTTTTCTATTCAGAGACCATTTTATTGCCGAGCACCAATCGGTGGACAAGGCCAATGGCCTCTATAGTAAAAATAGGATCCAGACGCGGGTAGATATAACGGACCTAAGCTGCCTCTTATGTACGCAATCGCTTGATAATTTAGAGGAAGCTGCGGCACATCTTGTCCAGATGCACAAAATTTGTATAGATTTGAATGAAAAGCTCGGTCTGGTGCCGCTCAAGTTCCCAGAAAGGGGACTGTGTCAATGCGCAGTCTGCGGGATCAAGTTTAGTGCATTCAGAGAACTGTACAGGCACTCTGGCTCACATTTCGCTAACAAGATCTGTGAGGTGTGTGGTATGCAATTTGAGACACCCTATACATTAAATTTGCATGTAAAAATAAAGCATGTTCAGGGACGGTTATGTATTAAGTGCAAAGCTATATTCCCTACCGGCGAGGAGCTAAGGCGACACGTAAAGGAAGAACGCTCTTGCAGTAATGGTTACTGCAAAATTTGCGATAAAGCCTTCGGGTATTGGCAATCATTGCAGAAGCATAGAGAAACTGTGCACGGAGCTGAAAAAAGGATATATTCATGCTCTGTGTGTAAAAAAGTGTTTGAGAAACGCATGCAGATGTATTTGCATTTCAAACAGAAGCATACAGATTCTTATAAGTGTAAAATATGCAATAAAAAGGTTTGCGGGTCGTCAGGGTTGAAGCAACATATGAGAACCCATAGTGATGAAGAATGGACGACCACAGAGGTGAGGATAGAGATTCCTGTTGAATTCAAAAATAGCAACGATGCTACTAATGAATGGATCACGACCGATTCAGCGGATCATGTAATTATCGATGTGACTAAAGTGAAACAAGAATGTTGTAAAAACGTATATGACGAATGGGTTATACTCCCGCTTAATTCTAAAGAACATGCTCCAGCTGTAAAACCAAAGTATAACCGAGACGACGACGGCACTGAGTGGATAATCACTGATATCGTAAAGGATGCAGACATAGATCAGTCTAGCCCGGTTTCTAAAAAGGGTCTACCAAATAGAGACATTATAGAACAACAAGACAACATGGAAGGATATCAATTCGTCTCTAGTAGTGTCCCAAAAGATTCAAGACCTAATAAATTGATACAAACTAGGAGAAAGCAACAAAACAACACGAAAGAATATACAATCTACTCAAAGCCTGCGCCAAATGTTCTAAAGGTTGACCAGCTAAAATGGGACAGCGTTCGTATCAAAGGACCTGGTGAAATGTGGCTTAAGGTGCCTAAAAATCCAAAATCCTTGTTAGATACTACGGATAAAAACGCTGTGCTCCTGCTTCGTCATACTACAGCAATCCCTTTTAAATTGGAGTACCTGAAATCATTCATTCCATGCTTTGCATGCGAGGAGAAATTTCTTGACCCTTTCCTATTCAGGGACCATTTTATTGCGGAACACCCTTCGGTTGATAAGGTTAATGGCTTTTACAGTAAAAACATCAAGACGCGGGTCGATATTACGGACCTAAGCTGCCTCTTATGTAAGCAAACGCTTGATAATTTAGATGAAGCGGCTTCACATCTTGTCAAGGAGCACCAAATAGAGATCGATCTTATGGAGAAGCTCGGTCTGGTGCCGCTCAAATTCACAGAAAGGGGACTGTGTCAATGCGCTGTCTGCGGTAAAAAGGTTGTTACGTTCAGAGAACTGTACAGGCACACTGGCTCACATTTCGCGAACCATGTCTGCGATGTGTGTGGCATGCAATTTGAGAGAAAGAATACATTAAAActgcatttaaaaataaagcatATTAAGGGACGGTTATGTCTAAAGTGCAAAGTTGTATTCCCTTCCGGTAAAGAGCTGGGCCAACACTTAAGGGAAGTACGCTCTTGCAATCCAGaatCGAAATCCCCGAATGCGTCTACAGCAAAGCGCAACGCCGAGTTAATAGTGAAACACGCGACAGTGTACCCGTTCAGGCTTCCCGAGAACTGTATGGTTTGTGTGTTCTGCTGTGAAGGTTTCGAGGACTGCGCTGTCTTTCGCAGCCACATGGAACAGGAGCATCAGGCGTTCCCCGTCAAAATGGCCTTCTCACACTGCTCCGAAGGTTTCGTAAAAACCGACTGCTCTGATATCCGATGCCGAATCTGCTTCGAACAAAGCGATACCCTTGAGGATATAGCTGTCCACTTGCGAAAAGTCCACAACaaaccgatactgctgtcagAGCCTTTAGGATTACAACCGTTTAAACCTGATAAGCTAACGTGCGTGCTGTGCGGAACGAAATCCTTCAGCCTCCGGCAGCTCAGTCGACACACGCAATCACACTTCCTCAGATTCACATGCGAGTCTTGCGGCAAGCGCTACGCCACAAACACAGCTTTACAAGtacacataaaatatacacaCGTTATGAAAAAGGAACAACATTGCTGTAGGAAATGTAGGAAGATGTTCAGTTCGCAGGATGAAAGGAGAAATCATATTCTGGAGACGAAGAAATGTTGGCCGTATTTGTGCCATCTGTGCGGCGAAAGATATGTGTCTTGGAATGCGAAACAGGTGCATTTGAAAGACGTCCATGGCTTAGAAGACGGCCCCCACACTTGCCCGGAGTGTGGCAAAATTTTCAAAGAAAAGAAAGCTTGCAAGGAACACTTTAAAATTACACACACGGACGATAATTATGTCTGTTCTTTTTGCGGTTTGAAGTTCACTGCCAAAAATCATTACGATGAGCACATGGTCGGTCATACGAAAGAGAAACCCTACACGTGTTCGGTTTGCTACAAGTCGTTTGCGAGGAAGAAGAATCTAACGCAGCACATGTGGATTCATAGCGAATACAAAAGATTTGAGTGCAAGATATGCAACAAAAAGTTTAATCAGAAAGTCTGTTTGGTGTCGCATAATAGAACTAATCATCCCGAGTTAACGCAGTTTGAGGAACAAAATGCCGGGGTCAAATATTTACTGTCGGTTCTAAAAAAGTGA
- Protein Sequence
- MYDIFHTSRHKNSALSFLDEEWTSTEVKIEFPVAFKNSNDGTNEWITTDSADHVNIDVTNVKQDNCKTVDDEWVIFPLNAAEQPPVQPNLCLDEDGAEWIITDAVKVTDTVQNNLDSNNIRTMTHQQNIRCVSNPAPNVSKTGELVSKLTRTVSDQQNNMVGYRFVSELASKLDKPSAKLTQNSTHEIVKGYRFVSNPAPAISEVDKLKLKGYRFVSNPMPAVSGVDQLKWNRVRVQGAGEMWLKSSKRPRPLLDTTSLSKADQNAVLLLRNTTAIPYRIENVRSIIPCFACGYKFIDPFLFRDHFIAEHQSVDKANGLYSKNRIQTRVDITDLSCLLCTQSLDNLEEAAAHLVQMHKICIDLNEKLGLVPLKFPERGLCQCAVCGIKFSAFRELYRHSGSHFANKICEVCGMQFETPYTLNLHVKIKHVQGRLCIKCKAIFPTGEELRRHVKEERSCSNGYCKICDKAFGYWQSLQKHRETVHGAEKRIYSCSVCKKVFEKRMQMYLHFKQKHTDSYKCKICNKKVCGSSGLKQHMRTHSDEEWTTTEVRIEIPVEFKNSNDATNEWITTDSADHVIIDVTKVKQECCKNVYDEWVILPLNSKEHAPAVKPKYNRDDDGTEWIITDIVKDADIDQSSPVSKKGLPNRDIIEQQDNMEGYQFVSSSVPKDSRPNKLIQTRRKQQNNTKEYTIYSKPAPNVLKVDQLKWDSVRIKGPGEMWLKVPKNPKSLLDTTDKNAVLLLRHTTAIPFKLEYLKSFIPCFACEEKFLDPFLFRDHFIAEHPSVDKVNGFYSKNIKTRVDITDLSCLLCKQTLDNLDEAASHLVKEHQIEIDLMEKLGLVPLKFTERGLCQCAVCGKKVVTFRELYRHTGSHFANHVCDVCGMQFERKNTLKLHLKIKHIKGRLCLKCKVVFPSGKELGQHLREVRSCNPESKSPNASTAKRNAELIVKHATVYPFRLPENCMVCVFCCEGFEDCAVFRSHMEQEHQAFPVKMAFSHCSEGFVKTDCSDIRCRICFEQSDTLEDIAVHLRKVHNKPILLSEPLGLQPFKPDKLTCVLCGTKSFSLRQLSRHTQSHFLRFTCESCGKRYATNTALQVHIKYTHVMKKEQHCCRKCRKMFSSQDERRNHILETKKCWPYLCHLCGERYVSWNAKQVHLKDVHGLEDGPHTCPECGKIFKEKKACKEHFKITHTDDNYVCSFCGLKFTAKNHYDEHMVGHTKEKPYTCSVCYKSFARKKNLTQHMWIHSEYKRFECKICNKKFNQKVCLVSHNRTNHPELTQFEEQNAGVKYLLSVLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -