Edod019711.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000135.1:1675138-1678457[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.36 22 6.1 0.9 1 20 65 84 65 86 0.94 2 17 0.0018 0.11 13.3 0.3 2 23 158 179 157 179 0.97 3 17 0.0052 0.32 11.9 0.2 1 23 183 205 183 205 0.95 4 17 0.0038 0.23 12.3 0.1 1 23 210 233 210 233 0.90 5 17 0.0092 0.57 11.1 2.8 1 23 239 262 239 262 0.96 6 17 0.00088 0.054 14.3 2.0 1 23 269 292 269 292 0.98 7 17 1e-05 0.00063 20.4 4.2 1 23 299 321 299 321 0.97 8 17 3.4e-06 0.00021 21.9 1.7 1 23 327 349 327 349 0.98 9 17 0.00047 0.029 15.2 0.2 2 23 353 375 352 375 0.95 10 17 0.012 0.75 10.7 0.1 1 23 454 477 454 477 0.96 11 17 0.055 3.4 8.6 0.5 2 23 504 525 503 525 0.95 12 17 0.37 23 6.0 1.8 1 23 548 570 548 570 0.98 13 17 0.0044 0.27 12.1 0.3 1 21 574 594 574 595 0.88 14 17 0.0075 0.46 11.4 0.3 1 23 606 629 606 629 0.95 15 17 0.039 2.4 9.1 1.3 1 23 635 658 635 658 0.90 16 17 0.00046 0.028 15.2 0.5 1 23 665 688 665 688 0.95 17 17 0.0052 0.32 11.9 4.2 1 23 697 719 697 719 0.98
Sequence Information
- Coding Sequence
- atgttaggaaaaCGTGGAAAGGTGACCAACGATACTTTAGTAGAAGTAGAAGATAATAGTTATTTAGAAGAGAAAAAGAAATCCAAATACCAGCGCAGTGCGAGAGCAGAGGCACGCATCGCAATGAAGAAGAACGCCAGATCTATACTCAGGTGCTGGACCCTGATACCCTTCCGATGGAAAAAGAGTAAATTCAAATGCGCTTACTGCGAGGACAACTTCACTGAATGCGACACACTCAGGGATCATGTCAGTCTATGCTCCACTCAACACAACATGGAGGATATCTACAACAAATTCAAGGAGATGCCGCTTATTAACGTCGATTGTACCGAAGTCTGTTGTTGCTTCTGTTCCGTCCCCTTCTTTGACGTCAAAGAAATGCGCGAGCACGTCATCAAACATGGCTTGGAATTCGACACGAACCATCCAGACGGCATCCTCCCATTCTACCTCGATAAAGAATCCTGGAAATGCGTGATATGCGACGAGAAATTCAACAATTTCCTCAAACTTTACGAGCATATGAACGTTCACTATCAGCATTATATTTGCGCTAGTTGCGGCAAGGGTTTCATGACTGCTCAAAGGTTGCGGAAGCACTCGGAAGTTCATGTATCTGGGTCTTTTCCATGCACGGATTGCGGCAGGGTTTTCACTATGAGAGCAGCTAGAGACTCTCACAAGGCGACTGCGCACGCCAAAGGATCTAGATACGAATGCCCCCACTGCTACATCAGATTCGACAGCTACTATCATAGGATGGCACATTTAAAAGAAGCACATAACGAGAAAGAGGTCGTCTACAGCTGCGCCCATTGCGAACTCTCTTTTAAAACGAGTGGTAAACGAGGCAGACACATGCGTTCCGTCCATTTTCCTCCCAAACACGACTTCAGCTGCACATTCTGTGACtggcattttaaaactaactaCGAACTGAAGAGACACATGGTCCGGCACACGGGAGAGAAGAACTTCCACTGCTATGTTTGTGGCAAATCCTTTCCTAGAAGCAGGGCCTTAGCGACCCATCTTAAAACGCACCAAGATCTTAATTGCAAGTGGTGTGGATTAGTGTTCAAGGAGAATAATCAATTACTGCTTCATATAACAACTATGCATCCGGAATTGATTGCTAATAATagttCAGTTAATGAAGTGCAATCAATATTAAGTGCGGCTAAACggaaattaaaagaaaacgtTAGCGATCGTCAGATGCGTAGGCGACGGCGAGCCAACAACGAGCTACCGGAAGAGTCTGAGAAAAGAATCTCGAAAACTATGATGAGACGAAACGCCTTGACTATTCTAGAGAGCTCCACCGCCTGGGCCTTTCGATGGTTCCACGGAGCTTTCTATTGCGCGTACTGTGACGCTAAATACGTCGACATAAAACTATTGAGAGAACACGTTGCCACCAATCACCTATCCGAACCACCTTCGAAAACAGTGTTCTCAAAACTAAAGGAGAGTAACATAGTTAAAATAGATATAAGTCAACTGCATTGCAGACTTTgcgatattagtatagatggtATATCAAATctaaaaacacacattaattcaCACGGGAAATGCATACAAGATAAATATGGCGATGGAGTTTTGCCATTCAAACTGGATGATACCAACGGTTTTCATTGCCAGATGTGCGCTTCACAGTTCGCAACCTTTGGCAAAATAAACGAACACATGAACACGCATTTTCAGAACTTTGTCTGCGACACATGTGGGAAGGGTTTTATCACAAAATCTAGGTTCAGGCCGCATGTTCAAACGTGCGTTAACAATTTACCGGAAAAGGGTAATTTCGCTTGCGGAATATGTGATGAATTCTTTAGCTCTAGAGCAGAGCGGCTAAGCCATCGTTCAAAAGTCCATCGCAAGGGAGTCCGGTACAATTGCCCTCGGTGCTCTGAAGTATTCACGACATACCACGCCCGAGCCAACCATTTGGTTAACTTTCACGCGGAAAAAACTAGAGAATATGTCTGCAGTGTTTGCAATCAGTCGTTTACTTCGAGTTCGAAGCGAGCAGCACACAGCAGGCTTGTGCACAGATCTCCAGTGCGAAGCGAAAGCCACCAGTGCTACTATTGCTCTGCTCATTTCCCTAGCAAGTGGAGACTTGGCCGGCATATGAGATCGCATGAACGTAAAATATTCTGA
- Protein Sequence
- MLGKRGKVTNDTLVEVEDNSYLEEKKKSKYQRSARAEARIAMKKNARSILRCWTLIPFRWKKSKFKCAYCEDNFTECDTLRDHVSLCSTQHNMEDIYNKFKEMPLINVDCTEVCCCFCSVPFFDVKEMREHVIKHGLEFDTNHPDGILPFYLDKESWKCVICDEKFNNFLKLYEHMNVHYQHYICASCGKGFMTAQRLRKHSEVHVSGSFPCTDCGRVFTMRAARDSHKATAHAKGSRYECPHCYIRFDSYYHRMAHLKEAHNEKEVVYSCAHCELSFKTSGKRGRHMRSVHFPPKHDFSCTFCDWHFKTNYELKRHMVRHTGEKNFHCYVCGKSFPRSRALATHLKTHQDLNCKWCGLVFKENNQLLLHITTMHPELIANNSSVNEVQSILSAAKRKLKENVSDRQMRRRRRANNELPEESEKRISKTMMRRNALTILESSTAWAFRWFHGAFYCAYCDAKYVDIKLLREHVATNHLSEPPSKTVFSKLKESNIVKIDISQLHCRLCDISIDGISNLKTHINSHGKCIQDKYGDGVLPFKLDDTNGFHCQMCASQFATFGKINEHMNTHFQNFVCDTCGKGFITKSRFRPHVQTCVNNLPEKGNFACGICDEFFSSRAERLSHRSKVHRKGVRYNCPRCSEVFTTYHARANHLVNFHAEKTREYVCSVCNQSFTSSSKRAAHSRLVHRSPVRSESHQCYYCSAHFPSKWRLGRHMRSHERKIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702286;
- 90% Identity
- -
- 80% Identity
- -