Basic Information

Insect: Eupithecia dodoneata
Gene Symbol: ham
Assembly: GCA_947044255.1
Location: CAMRHC010000054.1:5359393-5376188[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.038 2.3 9.2 0.2 2 23 71 93 71 93 0.93

2 9 0.0028 0.17 12.7 2.6 2 23 101 123 100 123 0.91

3 9 1.7e-08 1e-06 29.2 0.1 1 23 129 152 129 152 0.96

4 9 5.1e-06 0.00031 21.3 1.1 1 23 158 180 158 180 0.95

5 9 2e-05 0.0012 19.5 7.0 1 23 186 208 186 208 0.99

6 9 0.00034 0.021 15.6 0.4 2 21 216 235 215 236 0.94

7 9 1.2e-08 7.5e-07 29.6 0.7 1 23 630 652 630 652 0.98

8 9 4.4e-07 2.7e-05 24.7 1.7 1 23 658 681 658 681 0.97

9 9 4.8e-06 0.0003 21.4 3.3 1 23 687 709 687 709 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.038	2.3	9.2	0.2	2	23	71	93	71	93	0.93
2	9	0.0028	0.17	12.7	2.6	2	23	101	123	100	123	0.91
3	9	1.7e-08	1e-06	29.2	0.1	1	23	129	152	129	152	0.96
4	9	5.1e-06	0.00031	21.3	1.1	1	23	158	180	158	180	0.95
5	9	2e-05	0.0012	19.5	7.0	1	23	186	208	186	208	0.99
6	9	0.00034	0.021	15.6	0.4	2	21	216	235	215	236	0.94
7	9	1.2e-08	7.5e-07	29.6	0.7	1	23	630	652	630	652	0.98
8	9	4.4e-07	2.7e-05	24.7	1.7	1	23	658	681	658	681	0.97
9	9	4.8e-06	0.0003	21.4	3.3	1	23	687	709	687	709	0.98

Sequence Information

Coding Sequence: ATGGTTCGTTCTACCAACTTCCCCAGTGATGTCAATGTGCAACAGATCTTGATTGGTGGACAAGTGTGGTACAAGGTGGTCCGAGATATTCCATCCGGCCAAGAACTGCTTCTGGGGCCCAGGACACCCCTTCCTCTGCAAGATATCAATCGTTCACCAAtTCCAGACGATATCCGGACAGAAGACGAAGATCGCGAAGACACAGAGCCTAGGTGTTCATTTTGCGACGAGCCGTTCCCTAATATCGAAGCACTCGACCACCACCTGATCCAGACTCATGCCCAGCCAGCGGCGGCTTGTCACTGCGAGCTTTGCAACCGCTCTTACAGTTCAAGGGCGCTGCTGCTGCGCCATCGCGCTCTCGCCCACAGTAACATCAGGAAATACCCTTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGAGCGCAGCACAAGGGCGCCCGCAGCCACGCCTGCCCCGAGTGCGGGAAGACCTTCGGGACTGCTTCCGGCCTGAAGCAGCATACACACATCCACTCCAGCATCAAGCCCTTTCAGTGCAAAGTTTGCTTCAAGtcTTACACCCAGTTCTCCAACCTTTGCCGCCACCGACGCATGCACGTCGCATGCCAATCTGCCATCGAGTGTGGTAAATGCGGTCAGTCTTTTAACTCTTACGTTTCTCTGACCAAGCATAAGAGATTTTGCGACACCGCTTCTGCCAGTTCTGTTGGACTCAGAGGACAAATGCCACAGGGACTCCCGCAGATGCCAACTCTACCAAACGTCGGGATGCCGAACCCGAACGGGGCGCATAACCCCTTCTCAATGTATCGACCAGGCCTTCCTCTGCCATATAATACCTTTGCTCACTACCCAGCTGTACTCCAAACCTTATCAGCTGCGGCTGCAGCTTGTCCACCTGACTTCTTGAACCCTCTTTACTTCAACGTTCAAGGAGCAAGGCTCGCTATGGAGCACGATATGGCAATGAATAGCGCTAATTTAGCAAAGCAGCAAGAAGGACGCATGTCAGTAAAGAGCATTGATAGCTCTTCTCACGATGAAACTAGAAAATCTAAAGATTTGGATTTTGATTCTAACAAAGGCGAAAACACTGACAGAGTAACACCAAATAATTCGATGAGCCTTTACCCTAAACATTCACCACTATCAATGGAAGACACAACATCTCAAAATCGCCCTTCTCCTATAATGCCGATGCAGACACCGATACTGCCATACAATTTCCCTAGAGATGAACATAAGAGAAATTCGCCGTTCACTTTTTCACtgactcataataataatgaagtcCAAGAGAGGAAATCAGTTTCTCCATTACCTACAGATTTATCTAAAACTGCGGAAGAAGACAAAATTTCAGAGATTGACCCTGAGGAGATAGACGATAAGAAAGACGAGAGTGACCAACCTCTTGACTTGTCAGTTTCTCGAAAACAAAGTGATAAAGATTCCGAAGCTGATGGTGACGATCGTTCCTTTCGTCACTCTGTCAAATCATATTCACCACCAGAAAGCCCCGTGGAAAGGAGCAAGACTCCCGAGAACGATACCATGGACGTCGATGTGGAAGCGGTAGAGCCGAAACGAGATGATTCCCCGCCACAGCTTGTGTCACCCCCGCTCGCGTTCCCTATGCCGGTTCACCCCTCGCACAATCTCATCGATGCTATGTACCGTCCTCGATTTCCGTCCTTTCATTCAGCAGAGTCCCTACTCAACTCCGCTCATTCGCCCTACGTCCCGAGTCcgtttaattttttatcccCGCTTCTCAACACTGAGGGCCCAGACCGACAGCCTAGCGCATACGCCAAGTTCCGTGAGCTTAGCGCTGGCGCTGGTAAGGCTCGGGACCGTTATGCTTGCAAATTCTGCGGGAAAGTGTTCCCGAGGAGCGCAAATCTAACTCGACATCTGCGCACGCACACCGGGGAGCAGCCCTACAAGTGCAAGTACTGCGAGCGCTCGTTCTCTATCTCATCGAACCTGCAGCGGCACGTACGGAACATCCACAACAAGGAGAGGCCTTTCAGATGTCCCCTTTGTGATAGATGCTTCGGGCAGCAGACGAACCTCGACCGGCATCTGAAGAAGCACGAGGCGGAGGGCGGCGACTCGCCAAGTTCCGCGGATACGGAGCGCGAGGATACGTATTTCGATGATATCAGGACTTTCATGGGGAAAGTGACGTGTTCCCCGCCGGCGTCGTCTCCGCTGGCACCGTCACCGCACCCCGCTCCCCCGCACCGCTCCCTCGCCATTTCCACATAG
Protein Sequence: MVRSTNFPSDVNVQQILIGGQVWYKVVRDIPSGQELLLGPRTPLPLQDINRSPIPDDIRTEDEDREDTEPRCSFCDEPFPNIEALDHHLIQTHAQPAAACHCELCNRSYSSRALLLRHRALAHSNIRKYPCENCPKVFTDPSNLQRHIRAQHKGARSHACPECGKTFGTASGLKQHTHIHSSIKPFQCKVCFKSYTQFSNLCRHRRMHVACQSAIECGKCGQSFNSYVSLTKHKRFCDTASASSVGLRGQMPQGLPQMPTLPNVGMPNPNGAHNPFSMYRPGLPLPYNTFAHYPAVLQTLSAAAAACPPDFLNPLYFNVQGARLAMEHDMAMNSANLAKQQEGRMSVKSIDSSSHDETRKSKDLDFDSNKGENTDRVTPNNSMSLYPKHSPLSMEDTTSQNRPSPIMPMQTPILPYNFPRDEHKRNSPFTFSLTHNNNEVQERKSVSPLPTDLSKTAEEDKISEIDPEEIDDKKDESDQPLDLSVSRKQSDKDSEADGDDRSFRHSVKSYSPPESPVERSKTPENDTMDVDVEAVEPKRDDSPPQLVSPPLAFPMPVHPSHNLIDAMYRPRFPSFHSAESLLNSAHSPYVPSPFNFLSPLLNTEGPDRQPSAYAKFRELSAGAGKARDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDTYFDDIRTFMGKVTCSPPASSPLAPSPHPAPPHRSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00706269;
90% Identity: iTF_01161599;
80% Identity: -