Edod019707.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000135.1:1658330-1667332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.4 25 5.9 0.2 5 23 4 23 1 23 0.92 2 29 0.52 32 5.6 0.2 2 23 48 70 47 70 0.96 3 29 0.14 8.7 7.4 0.1 1 23 92 114 92 114 0.96 4 29 0.0034 0.21 12.4 0.1 1 21 118 138 118 139 0.95 5 29 0.015 0.93 10.4 1.9 1 23 172 195 172 195 0.95 6 29 0.00098 0.06 14.2 1.0 1 22 202 223 202 225 0.90 7 29 0.0029 0.17 12.7 0.2 2 23 231 252 230 252 0.96 8 29 0.084 5.1 8.1 0.1 1 23 282 304 282 304 0.96 9 29 5.4 3.3e+02 2.4 0.0 2 20 333 351 332 352 0.77 10 29 0.063 3.8 8.5 0.7 3 23 382 402 380 402 0.96 11 29 0.012 0.71 10.8 0.9 1 23 406 429 406 429 0.95 12 29 0.19 12 7.0 3.7 1 22 433 454 433 454 0.94 13 29 0.034 2.1 9.3 1.1 3 23 463 484 458 484 0.90 14 29 0.82 51 4.9 0.4 2 23 547 569 546 569 0.92 15 29 0.051 3.1 8.8 1.6 3 23 596 616 594 616 0.96 16 29 0.00019 0.012 16.4 0.3 1 23 620 643 620 643 0.95 17 29 1.6 1e+02 4.0 1.3 1 22 647 668 647 668 0.94 18 29 0.0011 0.07 14.0 0.9 1 23 675 698 675 698 0.95 19 29 0.001 0.062 14.1 0.3 1 23 705 728 705 728 0.93 20 29 0.74 45 5.1 2.6 2 23 734 755 733 755 0.95 21 29 0.00074 0.045 14.5 0.4 1 20 761 780 761 783 0.94 22 29 1.9 1.2e+02 3.8 0.3 2 23 876 898 875 898 0.94 23 29 0.12 7.2 7.6 0.3 3 23 926 946 924 946 0.95 24 29 0.071 4.3 8.3 0.7 2 21 978 997 977 998 0.93 25 29 0.01 0.64 10.9 7.1 1 23 1005 1028 1005 1028 0.93 26 29 4.3e-05 0.0027 18.4 0.8 1 23 1035 1058 1035 1058 0.98 27 29 0.0027 0.16 12.8 3.1 1 23 1063 1085 1063 1085 0.96 28 29 0.0011 0.067 14.0 2.8 1 20 1093 1112 1093 1115 0.91 29 29 0.00019 0.012 16.4 4.5 1 23 1121 1144 1121 1144 0.97
Sequence Information
- Coding Sequence
- ATGTGCATACTGTGCAGCGAGACTTTCTCAGAAGCAGCTGTGTTCAGACGTCACATGGACAAAGAACACAACAGATTTAACCTTAAGATCACATTCTCTCACGTCGCGGACGGACAATTGAAAGTCGACATCACAGAATTAACTTGTCGAATATGCTACTCGCCGTTCGATAACCTTGACGAAATAGCTCATCACTTAATTACAGCACATTGTAAAAGTATCGATCTCCTCAACGATTTAGGACTGCAACCATATCGACTGGAAAACGAAAAATTTGTCTGTGCGATTTGTAAACTCAAGCTAGCTAACCTTGTGGCTTTAAGTAGGCACACTGGTAAACATTTTAGAAGCTTTATTTGCGAGCATTGCGGTAAAGCGTACGCCGCGAAAGGGGCTCTGATGTATCACGTAAGATACTCTTGCGCTAAAGATGGAAAGACACGTTGCAGGAAATGTAGGAAGGTGGTCACTTCAATCAATGAGCATCTACAGGCCTCCCAATTATGTAGGCAGCATATCTGTAACGTCTGCGGGGATAGGTTCTCGTCGTGGAAAAACAAACATGAACACATGGAGTCAGCACATTCTGTGCCCAAAAAGACTTATCCATGTCCTGAATGCGGTGACGTCTTTAACTCTAGCAACCAGCTGAAACACCATTTCAGTTTCATCCACACTCATGATTACCTCGAATGCGTGAATTGCGGTCTGAAATTTATGTCTCAGTATAGACTGGATCGGCACATGATAGTACATACAGaACTCAGAGCAATCGCGAGAAGGAACGCCGAGATCGTGTTAAAGTATTCGACAGTGTACCCGTTCAGGTTGCAAGGGAAAGTCTTTATATGTGTTTACTGCTTCGAGGAATTTGAAGGTGCCGATGAATACAGGATCCATTTAGACTCGCATCTGAACGTCAACGTTTCCACAGCCTTCAGCCACCTCGGCGGGGCTAGATGTAGAGAATACCTTAAAGTTGACTGCGTTAACCTTAAATGCAGGATATGTAACGAACCGTTCGAAGCTCTCCCTGATATAGCGCAACATCTCAAATGTGAACATCAGGACGTGGCGAGTAATCTCGACTTAGACAGCGAATTAGGGTTGCATGCCTATAGATTGTTGAAAGACAGATGGAATTGCATGGTGTGTCAGCAGAAATTCCTGAGCTTGACAACGCTAGTGAGGCACATGTCGACTCATTACGCGGATTTTTTTTGCGATATCTGCGGGAAAGGATTTCTAAATCTCCAAAACTTTAATCTACACGTCAAATATACCCACACAGCGAAGCATATGTGCAGGAAATGCAAGAAGGAATTCACTACGCTGAACGATAAGAAAGAACATCGGAAGACTTCTACGAAATGTATGCAGTTTGCATGTATCCGTTGTGGGGAGAGATTTTCTTCTTGGGAGATGAAGATCAAACATATGAGCAAAGAGCATAATGTTGAAGCGCCTCAGTTGCAAGGGAAAAACTTGATATGTGTGTACTGCTGCGACACATTTGAAGATCCCGACGAGTACAGGCAGCATTTTGACTCGCATCCAAATGTAAACGTATCCACTGCCTTCGCGCACCTCAGAGGCGCTACGGGTAGAGAATACCTTAAAGTTGACTGCGTTAACTTACGATGCAGGATATGTAACGAACCGTTCGAAGCCCTCCATGATATAGCTCAACATCTGAAATTTAATCATAAGGACATAGCGGATAGCCTCAACTTGGACTGTGAAGTAGGGATGCATCCCTATAGTCTGTTAAAAGACAAATGGTTCTGCATGTTGTGCCACATGAAAGTGTCGAGCTTGACAACGCTTGCGAGGCACATGTCCTCTCACTACGCGGACTACGTTTGCGATGTCTGCGGGAGAGGTTATCGTAACATAACTAACTTGAAAATCCACGTCAAATTCACCCACTCGGAGAAACACATCTGCAGGAAATGTATGAAGGAATTCGTGACGGCGAAAGATAAGAAGGAGCATCTAAAAACATCAGCGAAATGCATGCAGTTTGCCTGTGTCCATTGCGGGGAGAGATTCTCTTCTTGGGAGATGAAAATGAGACATTTGACTAGTGAGCATAATGTTAAAGCTTCTCGGTACCCATGCACGGACTGCGAGCTCGTCTTCCCTACCCGTAAAAACTTCTACAGCCATTACGTTGTCGCGCACACTGACCAAGCGCTCAAGTGTTCCTGCTGTGAGAAGAAGTTTTTGAATAAAACTCTGCTTGAAGACCACTTAATCACTCACACTAATGAGAAGCCGTTTGAGTGCTCTGTCTGTTCGAAGTTATTTACTAGGAACAAGGCGCTGCTTCAGCATATGTGGATACATAGTGAAAAGAAGAGATTTACTTGTGATTTATCACGGGCTATGGTGAATCGGAACGCGGAAACAGTATTGAAATACTCCACGATATATCCATTCAGATTACGGAAGATGAATATAATGTGCGTTTACTGCTGTGACGAAAAACAAGACCCCGATAATTTCAGGAGCCATATGGACGAAAACCACAAAACAGTTAATTTAGATGTTGCGTTCGCTCATGTCAAATCTAGAAACAGACTAAGCGACAAAGATTACCTAAAGGTCGACTGCACGAACTTAAAATGCAGATTATGCGATGAACCTTGCAACTCAGTCGCCGCTGTTGCTGAGCATCTGAAGAACCGACATGAAAACGACGATATCAAAGCCATGGATCTTTGCTATGAAGTTGGCCTGTGCCCGTTCAATTTGATCAAAGATAAATGGGCATGTATGCTGTGTAATCTCAAAGTACCGACCCTAAACAAGCTGAGTAGACACATGTCTTCTCATTACGCTGATAACGCGTGCAACTTTTGCGATAAGCGGTACTTGAGCGCGCACGGCTTGAGATTCCACATTAAGTTCAAACATTCTAATGTAGATAGTTGCAGAAAGTGCAAGATGAAGTTCTCTACTCCGGAACAAAAGAAGGAACATCTAAAAGCTTCAGCGAAGTGTCTAGGATTCTGTTGCGTTCATTGTAATAAAAGGTTCTCCTCTTGGGAACACAAGCAGAAGCATTTGGTCAGCGAACATAACGTTAAAGCTATTACATACCCTTGCCCGGATTGCGAGACGGTTTTCGAATCGAGATCTAACTTCTACTATCATTATAATACGACTCATTCTGACTTGCCTCACATGTGCTCTTATTGCGGTAAACGGTTCCTGAAGAAAAGTCAGCTGGATAATCATTTGGATAGTCACACGGGGAAGATTCGAGAACAACACCGATGTTCTACCTGTTCTAAGACCTTTACTAGAAGGCAGGGCTTGCAGGAACATTTGTGGACCCATAAGGAAACTAAGCGATTTTCTTGCCTATCTTGTGATAAACATTTCACTACTAAAAGATATTACAATTGGCATATGAAAACTGCTCATAAACTTAAATAG
- Protein Sequence
- MCILCSETFSEAAVFRRHMDKEHNRFNLKITFSHVADGQLKVDITELTCRICYSPFDNLDEIAHHLITAHCKSIDLLNDLGLQPYRLENEKFVCAICKLKLANLVALSRHTGKHFRSFICEHCGKAYAAKGALMYHVRYSCAKDGKTRCRKCRKVVTSINEHLQASQLCRQHICNVCGDRFSSWKNKHEHMESAHSVPKKTYPCPECGDVFNSSNQLKHHFSFIHTHDYLECVNCGLKFMSQYRLDRHMIVHTELRAIARRNAEIVLKYSTVYPFRLQGKVFICVYCFEEFEGADEYRIHLDSHLNVNVSTAFSHLGGARCREYLKVDCVNLKCRICNEPFEALPDIAQHLKCEHQDVASNLDLDSELGLHAYRLLKDRWNCMVCQQKFLSLTTLVRHMSTHYADFFCDICGKGFLNLQNFNLHVKYTHTAKHMCRKCKKEFTTLNDKKEHRKTSTKCMQFACIRCGERFSSWEMKIKHMSKEHNVEAPQLQGKNLICVYCCDTFEDPDEYRQHFDSHPNVNVSTAFAHLRGATGREYLKVDCVNLRCRICNEPFEALHDIAQHLKFNHKDIADSLNLDCEVGMHPYSLLKDKWFCMLCHMKVSSLTTLARHMSSHYADYVCDVCGRGYRNITNLKIHVKFTHSEKHICRKCMKEFVTAKDKKEHLKTSAKCMQFACVHCGERFSSWEMKMRHLTSEHNVKASRYPCTDCELVFPTRKNFYSHYVVAHTDQALKCSCCEKKFLNKTLLEDHLITHTNEKPFECSVCSKLFTRNKALLQHMWIHSEKKRFTCDLSRAMVNRNAETVLKYSTIYPFRLRKMNIMCVYCCDEKQDPDNFRSHMDENHKTVNLDVAFAHVKSRNRLSDKDYLKVDCTNLKCRLCDEPCNSVAAVAEHLKNRHENDDIKAMDLCYEVGLCPFNLIKDKWACMLCNLKVPTLNKLSRHMSSHYADNACNFCDKRYLSAHGLRFHIKFKHSNVDSCRKCKMKFSTPEQKKEHLKASAKCLGFCCVHCNKRFSSWEHKQKHLVSEHNVKAITYPCPDCETVFESRSNFYYHYNTTHSDLPHMCSYCGKRFLKKSQLDNHLDSHTGKIREQHRCSTCSKTFTRRQGLQEHLWTHKETKRFSCLSCDKHFTTKRYYNWHMKTAHKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -