Edod009655.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia dodoneata
Gene Symbol
-
Assembly
GCA_947044255.1
Location
CAMRHC010000050.1:1094459-1111765[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.058 3.5 8.6 0.1 1 23 422 444 422 444 0.97
2 11 9.4e-06 0.00058 20.5 1.6 1 23 454 476 454 476 0.98
3 11 2.8e-07 1.7e-05 25.3 1.7 1 23 482 504 482 504 0.99
4 11 0.0019 0.12 13.2 2.0 1 23 511 533 511 533 0.99
5 11 1.4e-05 0.00085 20.0 0.6 1 23 539 561 539 561 0.96
6 11 3.7e-06 0.00023 21.8 0.2 1 23 567 589 567 589 0.97
7 11 2.4e-05 0.0015 19.2 1.9 1 23 595 618 595 618 0.95
8 11 6.3e-06 0.00039 21.0 1.1 1 23 624 647 624 647 0.94
9 11 1e-05 0.00063 20.4 1.4 2 23 654 675 653 675 0.97
10 11 2e-05 0.0012 19.5 1.7 1 23 681 703 681 703 0.97
11 11 0.017 1 10.3 0.0 1 21 709 729 709 733 0.91

Sequence Information

Coding Sequence
ATGACAAGCTGCCTTGTGTGTGGCTCCCCGGGACCATTCGGAAGAGACTATATACAAAATGTGTTTGATGAGAATaACACAACATGTGAAAGAACGTTAACAGAGGCATTATGTGAAATGATTGACAAGAAAATTAAGGCAGAGAATGTACACACGACGATACTTTGCAAGGAATGTCTTGATATGTGTATTAACTACGATATGTACAAGGCTAATATGACAGTAATTAAGACCAAAATATCAGAGCAGTTCTATGAAACTTTAGAAAAGCTTACCACTGCACCTGTCGTAGCATCTAAAAAAGAGATTAAAGGAAAGTTCGTGGTACCTGCGTCCAAACTCCAACCTTTGCCAGCGGATTACCAGCTCAATTTAGGAAAAATTGCGGCGCTGGCTTCCAGTACGCAAGCAAAGAATCAAAAGCCCTTGCTCAACCTCAAAGTAACCATCGGAAACTCAGTGTTAACGCAGAGCCTAACGACATCTACCGTCAAGATGATGAAACCTACAGAGCTGTCAAACACGAAACACATAAACGTCATCGGCGATTGGAATGATGGCTTACCTAGCGAGATCTTCTCGAATACTGATAATAATGAAGATCTGGATAATAATATGGAAATTGATGAAGATTGCAAAGCGATGGCACCGGTCGAATGTAATCAGATTATGATAGATGCAAACATTATAAAGGATGAAAACCATGATAATCCTCAGTACATAAACGCAGAGAACTTTGAACTGCTATACGAGGGGCAGGAAGATGGACAACCACataCAATAGTCCTGAATAGCGACAGTCCCTTTCTGCAAATGATGTCGTCTGGACAGAAGTTGGTTTACGAGAACGGGGAGATATCACTCGTTATGGATGACGATAATGATGTCGGGAATGATGAGGGACAAGATTCGAACGACGAAGAGTCTCAGATAGAGCTGCAAGTGTCTGGTGATGAGGAAACTGCGAATGCTATCATAGCGGCAGCTCAGGAACAAGGTGGCGCCTTCATAAAAGTAGAAAGCGGTGAGATGTATAGAGTGAAGTCAGTGCAGAGCCATCCTTCAGACAGCGtgccacagacagacagacaaacaaactCCGCCTCGACACTCGTCAGGAGGGAAGGAGACAGCGCTACTTACACTTGCCTTATCTGTCCACATGCCTCAGGTCCTACTGCGAAGTCGAAAGTGATAGGGAGCTTCACCGCAAAGGCACAGGAGATGGTCCAACACATGAAGTTCGCACACTCCTCGAAAGTGTACATTTGTGCGAAGTGCGGCGTTATTATGAAGAATCGCTCGGAATATGCGTCGCATTTGGCCCGCCACGGCAATGCCGCCCTTAAAACCCGCTCCTACGAATGCGATATATGCCACAAAAACTACAACTCACGCACGCTACTGCAAGAGCACATGAACATACACACAGGCAGCCGACCGTACCGCTGCCAAGTGTGCGACAAGACGTTTGCCTCCAAGTACACTATGACGGCGCATATGAAGACGCATCAGGCGCGACCCCGTCCCTTCAAATGCGGCACGTGCCTCAAGTCATTCCTCTCGCAGCAGAATCTGAACCAGCATGAGAAGACTCATCTAGGTATCAAGAGCTTTGTCTGCGAGACTTGTGATAAAGCCTTCGCCACGCAGCACAGCCTAGAAAGCCACTACGTAGTCCATAGCGGGACTAAGAACCACGTCTGTGACGTGTGCGACAAGGGATTCGCGAGGCGCGCGGAACTCAAGGACCATGTTAGAATACATACAGGCGAGCGTCCATTCGCCTGTAACATTTGTGACGCGCGTTTCTCGCAGCGCTCGAACCTGCACTCCCACAAGCGAGCCACGCATCTCAACGACAAGCGGCACGCCTGCCCCGACTGTCCCAAGCGGTTCAAACGACGCAGACTCCTCCAGTACCATATAAAGGCGGCGCACACCGGCGAGCGACCGCTAGTCTGCGAGCTCTGTCAAACTACGTTCGTGTACCCCGAGCACTTCAAGAAACATATGCGGATACATAGCGGGGAACGTCCTTACTACTGTGAGATCTGCGGCAAGTCGTTCAACTCCCGCGACAACAGGAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGCGTGCGGCGCCTCTTATATGCGCAAGCGAATGCTCGTCGCGCATATGAACGCTAACgGTCATTTAGCAGAATCAATAGTGGTGAACCAGCCACGAGTTACGAGAGTCACTGAAGCTcTAAAGGGACAAAACAAGGTTGAAAGTGAAAATAGCAATGGCGAAGatTATCACGAGGAAGAAGAAACGGATTCAGGAAATGTGTTCTCATTAGTTGAAGaTAACGAAATCACAGACCCGCAAGAGAATGCTATGATCACGGTCTCTGCGGACAGTATTGAGCCACATGTTCAGGTGACAAATGAAAATGGCAGCATTCTACAGTTCATACAAGTGAAAATGCCGGATGGCAAAGATGGATGGGTGGCTCTCAACgactga
Protein Sequence
MTSCLVCGSPGPFGRDYIQNVFDENNTTCERTLTEALCEMIDKKIKAENVHTTILCKECLDMCINYDMYKANMTVIKTKISEQFYETLEKLTTAPVVASKKEIKGKFVVPASKLQPLPADYQLNLGKIAALASSTQAKNQKPLLNLKVTIGNSVLTQSLTTSTVKMMKPTELSNTKHINVIGDWNDGLPSEIFSNTDNNEDLDNNMEIDEDCKAMAPVECNQIMIDANIIKDENHDNPQYINAENFELLYEGQEDGQPHTIVLNSDSPFLQMMSSGQKLVYENGEISLVMDDDNDVGNDEGQDSNDEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSHPSDSVPQTDRQTNSASTLVRREGDSATYTCLICPHASGPTAKSKVIGSFTAKAQEMVQHMKFAHSSKVYICAKCGVIMKNRSEYASHLARHGNAALKTRSYECDICHKNYNSRTLLQEHMNIHTGSRPYRCQVCDKTFASKYTMTAHMKTHQARPRPFKCGTCLKSFLSQQNLNQHEKTHLGIKSFVCETCDKAFATQHSLESHYVVHSGTKNHVCDVCDKGFARRAELKDHVRIHTGERPFACNICDARFSQRSNLHSHKRATHLNDKRHACPDCPKRFKRRRLLQYHIKAAHTGERPLVCELCQTTFVYPEHFKKHMRIHSGERPYYCEICGKSFNSRDNRNTHRFVHSDKKPYECLACGASYMRKRMLVAHMNANGHLAESIVVNQPRVTRVTEALKGQNKVESENSNGEDYHEEEETDSGNVFSLVEDNEITDPQENAMITVSADSIEPHVQVTNENGSILQFIQVKMPDGKDGWVALND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00702230;
90% Identity
-
80% Identity
-