Edod020074.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000144.1:255697-259221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.3 4.5e+02 2.0 0.1 2 23 166 187 165 187 0.88 2 15 2.5e-05 0.0015 19.2 3.6 2 23 286 307 286 307 0.97 3 15 0.00024 0.015 16.1 0.1 5 23 318 337 316 337 0.94 4 15 0.027 1.7 9.6 0.3 1 23 343 365 343 365 0.93 5 15 0.00034 0.021 15.6 0.0 1 20 371 390 371 393 0.92 6 15 0.00059 0.036 14.9 0.5 3 19 400 416 398 417 0.94 7 15 0.1 6.2 7.8 1.3 1 23 512 534 512 534 0.98 8 15 0.0015 0.094 13.5 0.2 1 23 540 563 540 563 0.93 9 15 9.5e-06 0.00058 20.5 0.3 3 23 571 591 570 591 0.97 10 15 6.1e-06 0.00037 21.1 2.6 1 23 597 619 597 619 0.98 11 15 0.00036 0.022 15.5 0.0 2 23 644 666 644 666 0.95 12 15 6.3e-05 0.0038 17.9 0.4 1 23 672 695 672 695 0.93 13 15 0.0018 0.11 13.3 0.6 3 23 703 723 702 723 0.98 14 15 0.0034 0.21 12.5 0.0 6 23 732 749 731 749 0.98 15 15 0.00091 0.056 14.2 0.6 1 23 755 777 755 777 0.96
Sequence Information
- Coding Sequence
- ATGAACACCACGGATAAAACTACGGGAGCAGCTGAGCCGACTACTACTGCTACTCGTAAGAGGAGAGCATCAAAATCAAGTAAAGATAGTTCGCGGACAGATATCAATAACCTGCCAGAAAATTTCCAACTAACCAATGAAATCTTGAAGACCAATGTTTGCCGACTGTGTGCGACCTACCACAAGTCAGAAGCAGAGCTCCTGCCCCTCTATGAAGTCTATAAAGGCACCGAACTGTGGAGAGTGGTAAACTACCTTACGCTAATTGGGGTAAACAAAAATGATGGGCTACCAGAGGTAGTATGCAGGAAATGTACAGACCAGATTTTGGCATGGTACAGGATGCGCAAAAACATAAAAGGTATCACACGCATCCTAGAACAAGAAGCTGAGATACTCAGGACAGGGGTGgtaaatttaaatgaaagATTGCTGTTGACTGAAACTATTCAAAACATTCTCGCTTCCTTCTCACTGAATGTAGAATCGGTGATTGTATGCCAGTTGTGTGACGTACGCACTGCGAGCGAAGAGTTCGTGCGGCATTTAGAGACGAACCACGCGACCGTGAGGGACAGAGAAGCACTTGAGAAGTTTGTGCAAGACCACGTGACCTTCGAAGAGAGGCTCGCCTCCGACCCTGATTCCGACACCGCATCCGCGACGCTGGCGTCTCCCGACACTTTGTCGCTGTCCCATCTCGAGCAACAAGCAGGGAATCTTGATAGGGTCAAGCGTGGAGTCGTCGCAGACAAGGGCGAGGTGACGGAACTCTCGAGTGATGATCGTAGGAGTGAGTCAACTGCGGAGGTTAGCGCGGCTCCGCACGAAACCAACCAAAAGCGCATCCCGGCCGTCTGTCCGCACTGCAACCGCGTCTGCTCCAACAAGTACAACATGCTCGTGCATATGAACACGCACACGGAAGGCCACAGCGCAAAGTTTGACTGCGAGTGCGGAAAGAGTTACACCACGCGCGGGAACTTAGTAGCGCATAGACGCGCGGCGCACGAGAGGGTGTTACCGCACGCGTGCGAGGCGTGCGGGCGCGTGTTCCGCACGCGGGCGGCGAGGGACGTGCACGCGCGCCAGCACTCGGGCGCACGGCCCTTCGTCTGCGGAGACTGCGGGCGAGCCTTCCGCGCCGCCAGCGCGCTGCGCCAGCACGCACCTACGCATGCGCCGCGCGCGCTGGCTTGCGCGCTCTGCGGGAAACGCTTCCGCAGGCGCGCGCATCTGCGCTATCACTCGCCCGCGGCGTCTGAGGGAGGCTCCGAGCGTGGCGCGGATCGAGAGGGGTCCGACCGCGCGCCGCTCGCCGCGCTCGCCGCCGCCCTGAGGGCCCTGCGCGACCACTGCCTCGCGCACCACGCGCCCGCGCCTGAGCCTCCCCGGGGGGAGGCCAGTGCGGGGGAGGGGGACCCTGCCGCGTTCGACGACCTCACGATGCGGAACCAGCGCCGCGACCGGTTCGACCCGGTGACGCGCAAGGCGCTGGACGCGGCTCGAGCGCGCTCCTCCGACCGCACGCACTACACGTGCGCGCAGTGCGCCCGCCGGCTCGGCTCCGCGCACGCCTTCGTGCACCACCTGCGCATCCACTCGGGCGCGCGCCCGCACGTGTGCCACGTGTGCGGCGCCGCCTTCCGCGCGCCGCAGGGGCTCGCGCGCCACCTCGCGCAGACGCACGAgcgccgcgcgcgccgcgcctGCGCGCTCTGCTCCAAGACCTTCGCCAATGAACAGAATCTTGCGCAGCACATGCGCACGCACACCGGCGAGCGCCCGCACGAGTGCACGCAGTGCGGCCGCCGCTTCGCGCAGAGCGGGGCCCTGCACGCGCACCGGCGCACGCACTCGGCGTGCCGGCCGCACGCGGACGCCGCCCCCCTAGCCCCGCAGCCCCCGCCGCCCTCTCCCCGCCCGCGTTCCTGCCCCGAGTGCGGGCGCGTGCTGTCGGACGGTGCGAACCTGGCGCGGCACGTGCGCGCGGTGCACAGCGCGCGCCGCCCGCACGCCTGCGCGGACTGCGGCGCCTCCTTCACGCGCGCCGAGCACCTGGCGACGCACGCGCGCGCTCGGCACGCTAGCGGTGCGGCCCTGCTGTGCGAGACGTGCGGTGCACGCTGCGCGTCGTCGGCGGCGCTGCGCTCGCACCGGCGCGTGCACTCCGCTCCACGCCACATGTGTGCGTGCGGGCGAGTGTTCCGGCGCGCGGGGGAGCTGCTCGCGCACGCCTCGACGCATGGGGGCGCGCGCCCGCACGCCTGCGCGCAGTGCCCGCGAGCCTTCCGCCTGCGTGCGCAGCTCACGCTGCACGCGCGCAGACACGCGCGTGCATCACTAACAGCAGATGAcgcggcgccgccgccgagTGCGATGTTGCCCGAAACCGATATCGATATTTTTCATGATATTATGCGGCTTTAA
- Protein Sequence
- MNTTDKTTGAAEPTTTATRKRRASKSSKDSSRTDINNLPENFQLTNEILKTNVCRLCATYHKSEAELLPLYEVYKGTELWRVVNYLTLIGVNKNDGLPEVVCRKCTDQILAWYRMRKNIKGITRILEQEAEILRTGVVNLNERLLLTETIQNILASFSLNVESVIVCQLCDVRTASEEFVRHLETNHATVRDREALEKFVQDHVTFEERLASDPDSDTASATLASPDTLSLSHLEQQAGNLDRVKRGVVADKGEVTELSSDDRRSESTAEVSAAPHETNQKRIPAVCPHCNRVCSNKYNMLVHMNTHTEGHSAKFDCECGKSYTTRGNLVAHRRAAHERVLPHACEACGRVFRTRAARDVHARQHSGARPFVCGDCGRAFRAASALRQHAPTHAPRALACALCGKRFRRRAHLRYHSPAASEGGSERGADREGSDRAPLAALAAALRALRDHCLAHHAPAPEPPRGEASAGEGDPAAFDDLTMRNQRRDRFDPVTRKALDAARARSSDRTHYTCAQCARRLGSAHAFVHHLRIHSGARPHVCHVCGAAFRAPQGLARHLAQTHERRARRACALCSKTFANEQNLAQHMRTHTGERPHECTQCGRRFAQSGALHAHRRTHSACRPHADAAPLAPQPPPPSPRPRSCPECGRVLSDGANLARHVRAVHSARRPHACADCGASFTRAEHLATHARARHASGAALLCETCGARCASSAALRSHRRVHSAPRHMCACGRVFRRAGELLAHASTHGGARPHACAQCPRAFRLRAQLTLHARRHARASLTADDAAPPPSAMLPETDIDIFHDIMRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00696658;
- 90% Identity
- iTF_00696658;
- 80% Identity
- -