Edod001422.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000005.1:612416-617196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.9e-06 0.0003 21.4 2.3 1 23 166 189 166 189 0.96 2 17 1.5e-05 0.00092 19.9 6.0 1 23 192 214 192 214 0.97 3 17 2.2e-07 1.3e-05 25.7 1.3 1 23 247 270 247 270 0.95 4 17 1.1e-07 6.8e-06 26.6 1.0 1 23 276 299 276 299 0.97 5 17 2.5e-05 0.0015 19.2 0.4 1 23 322 345 322 345 0.94 6 17 1.8e-07 1.1e-05 25.9 1.8 1 23 351 374 351 374 0.97 7 17 0.017 1 10.3 0.5 1 23 380 402 380 402 0.96 8 17 0.00074 0.045 14.5 0.6 3 23 410 430 410 431 0.95 9 17 0.00043 0.026 15.3 0.8 1 23 453 476 453 476 0.95 10 17 0.98 60 4.7 2.4 2 19 483 504 482 509 0.65 11 17 0.02 1.3 10.0 0.8 1 23 515 538 515 538 0.93 12 17 9.3e-06 0.00057 20.5 0.3 2 23 543 564 542 564 0.96 13 17 0.045 2.7 8.9 0.6 1 23 570 592 570 592 0.92 14 17 7.6e-06 0.00046 20.8 4.4 1 23 598 620 598 620 0.97 15 17 2.4e-05 0.0015 19.2 2.5 1 23 626 649 626 649 0.94 16 17 0.00029 0.018 15.8 4.4 1 23 655 677 655 677 0.98 17 17 0.00027 0.017 15.9 1.7 1 23 683 706 683 706 0.96
Sequence Information
- Coding Sequence
- ATGACCGCCACGTGCTGCCTATTCTCTCGGGCCTCCATCACAAGCCGCAACAGCTTCTGCGCCACGTCTGTAGTCGACCTTCCCGCTTACTGTAtgagtattcatttatttcagctgTTCTTTGGAGATGGCTGCCCGGAAGGCTTATGCTTCCTCTGCGACACACAGCTGCACAAATTCTGCAGGTTCTTTGAGCTCGCACAGAAATCGGAGAGGAATCTCAACAGTTTTCTCAACTGTGGGATGCAGCTAATATCCCATACCCTGGCACCGACTGAGAGAATCCACAACCTAGCAGTGTCTCCGACCAAAGTTATATCCTCCTTGGACTGGCACATGAAGGATGAAGAAGTGGTGGTCAAAACAGAGCTGCTTGAAGACAGGACACGAGGGAAAGACATGGATGATGATGATGTACCCGACAACGACTACGAATCGGACCCCCTAGAAGCCCTAACGGTCAAAGTAGAAGCCCTGGACGTAAAGCACACCATCCACCCTTGCGAGGAATGCCCCCGTCGCTTCAACAGCAACAAAGACCTCAACAAACACATGACAACGTTCCACAAACACCACAGCTGCGATACATGCGGAGAAACGTTCAAGAAACAATCATATCTAAAAATGCATATGCGACACCATGAAGAAATCTCATtcgatattaaaaacattgacGATGTCCCATTGGAAACTAAACTCAGTGAATTGGTCAACTTGATAGCAACAGATGGTTCGAAATTTTCTTGTGTAATGTGTGGTAAATCGTTCAGCCAGAAGGgtcatttaaaaactcatatgATGGCAATTCACACGGGTGAAAAACCATTTCCATGCACGTTGTGTGATAAAAAATTTGTTCAGCGTAGTAACTTATCTGCCCATATGAGATCAAGGCATGTAAAGACATTTAATAATTGGAATATGAGTGGAGATAATGGAGAAGAAGATACGAGTGCGAAGCCCTTTGCTTGTACAATGTGCAGCAAAACGTTTGCAATGAAATCCTACCTACAATCTCATATAATGGCGATTCACACCGGAGAACGTCCGTTCCCTTGCACGTTATGTGACAGGAAATACACGCAGAAAAGTCATTTACGAGCGCATATGAGAATCGCTCACGCTGTGGAGAAACCATTTGAATGCGACTGCTGTGAGTTGAGGTTCGGAGACGCTGAAGAGTTGAGGAAACATGCGAAAATACACGCTAATGATACGCCTTTAGGTTGCGTTACGTGTGGCAAGGTGTTCCAAGCGGAAAGCGATctgaaaaaacatataatacTTCATCACGGAGAAGCTTCGCTGCTCTGCGATCGCAGCGACATCATCAGTGAGAATGTTGGTCGAAAACGCTTCCCTTGCGACCAGTGCAGTAAAAGTTTCGGCTGGAAATCtcatttaaaaactcatataATGGCAATTCATACCGGGGAACGACCTTTTTCTTGCAATATGTGTGAGAAGAAATGCGATGACAAGTTCAATTCAAAGAGCGATTTAGACATACACAATACCCAAACTCACGCTTCTGATATGCCATTCCGTTGCGACTCTTGCGAACTCAGATTCGACGATAAGAACGTACTCAAAAAACATGAATTACTACAACACGAGGAAAAATTAACCTGTGATATATGCGTCAAGTCGTTTAACGCGAAAAGCGCGTTGCGAAGGCACATGTCCATTCACAGCACGGAAAAACCCTTCGCATGTATAATCTGCAACAAATTCTACAAACAAGAGCGCATACTGAAAAAGCACATGGAGATACATACAGATGAAAAACAGTTCGCTTGCGACAGATGCGACAAGAAATTCTACCAGAAATGCAACTTGACTAGCCATATGAGGATCCATTCCGGGGAAAAACCATTCGTTTGCGACCGGTGCGGAAATAGTTTCAACCAGAAAAGTCATTTAAGAACTCATATATTGTTTATGCATACGTCGGAACGACCTTATTCGTGCGACGTTTGCAGTAAGCGGTTTAGGTTGAAGAGTTGTTTGCGGAATCACAAAATGGTGCATAGTGGGGAGAGGCCGTATCCATGTACGTTGTGcgagaaaaaatattacaagaaaAGTGAGTTGAAGTCTCATACAGCGAAAATGCATAACTCAAGCTAA
- Protein Sequence
- MTATCCLFSRASITSRNSFCATSVVDLPAYCMSIHLFQLFFGDGCPEGLCFLCDTQLHKFCRFFELAQKSERNLNSFLNCGMQLISHTLAPTERIHNLAVSPTKVISSLDWHMKDEEVVVKTELLEDRTRGKDMDDDDVPDNDYESDPLEALTVKVEALDVKHTIHPCEECPRRFNSNKDLNKHMTTFHKHHSCDTCGETFKKQSYLKMHMRHHEEISFDIKNIDDVPLETKLSELVNLIATDGSKFSCVMCGKSFSQKGHLKTHMMAIHTGEKPFPCTLCDKKFVQRSNLSAHMRSRHVKTFNNWNMSGDNGEEDTSAKPFACTMCSKTFAMKSYLQSHIMAIHTGERPFPCTLCDRKYTQKSHLRAHMRIAHAVEKPFECDCCELRFGDAEELRKHAKIHANDTPLGCVTCGKVFQAESDLKKHIILHHGEASLLCDRSDIISENVGRKRFPCDQCSKSFGWKSHLKTHIMAIHTGERPFSCNMCEKKCDDKFNSKSDLDIHNTQTHASDMPFRCDSCELRFDDKNVLKKHELLQHEEKLTCDICVKSFNAKSALRRHMSIHSTEKPFACIICNKFYKQERILKKHMEIHTDEKQFACDRCDKKFYQKCNLTSHMRIHSGEKPFVCDRCGNSFNQKSHLRTHILFMHTSERPYSCDVCSKRFRLKSCLRNHKMVHSGERPYPCTLCEKKYYKKSELKSHTAKMHNSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -