Edod006557.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000031.1:512734-513456[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-11 1.1e-08 34.9 0.0 3 43 16 56 14 58 0.89 2 2 9.6 6.6e+03 -2.7 0.1 17 24 130 137 129 138 0.85
Sequence Information
- Coding Sequence
- ATGCCTCGAACATACCAAcgaaagaaaattaaaacatacTCTTTAGAAGATTTAACTCAAGCCATTGAGAAGGTAAAAAATGGTGAGCTAACGACGTATAGTGCAGCGCAACAGTACGGAATTCCCATGACAACACTTTATGAACTTGTTAAGGAAACCAATGAAACTAGGAAGTCAAATGCAGGGAGGCCAACGGTTCTACTCTTGGAAGTAGAAACAAAATTAGCAGAAACAATAATAACTATGGAAAAATGGGGATTTGGATTGTCAAGGTATGAAGTTATGGAGATTGTTGGTGATTACGTAAAGGCAAATGGTATAAAGAcaccttttaaaaataatgtcccAGGCCCAGACTGGTTTATTAATTTCAGGAAAAGACATCGCCTGTCTATAAAAAAGGCTCAGTCTGTCGAATACGTTCGTAAAAAAATTACCGATCCATTCGTCATTGCTGAATATTTTGAGTTCCTCGGAAATACTTTaaacgatttaaatctttttgAGAACCCCCAGCTCATTTGGAACTTAGATGAAACATCATTATGCCTAGATCCATCCAAAACGAAAGTAGTctgccaaataaataaaccctGCTCGAGGAAAACATACGGGAGTGGAAAGGAAAACATCACCGTGTTGGCAGGCGCAAGCGCTAGTGGCAAAAAGTTACCCCCTTTGATTATATGGATGGCTGAGCAAAAAGGGGTGGATGGAGACTga
- Protein Sequence
- MPRTYQRKKIKTYSLEDLTQAIEKVKNGELTTYSAAQQYGIPMTTLYELVKETNETRKSNAGRPTVLLLEVETKLAETIITMEKWGFGLSRYEVMEIVGDYVKANGIKTPFKNNVPGPDWFINFRKRHRLSIKKAQSVEYVRKKITDPFVIAEYFEFLGNTLNDLNLFENPQLIWNLDETSLCLDPSKTKVVCQINKPCSRKTYGSGKENITVLAGASASGKKLPPLIIWMAEQKGVDGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -