Ecen009710.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000641.1:69623-86855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00022 0.018 16.3 1.6 1 23 41 63 41 63 0.96 2 14 0.00042 0.033 15.4 1.7 1 23 69 91 69 91 0.97 3 14 1.2 97 4.5 2.1 1 23 222 245 222 245 0.92 4 14 0.14 11 7.5 3.1 5 23 288 307 286 307 0.96 5 14 0.02 1.5 10.2 0.7 1 23 311 334 311 334 0.94 6 14 0.023 1.8 9.9 0.1 3 23 348 369 347 369 0.95 7 14 0.017 1.3 10.4 0.1 3 23 382 403 381 403 0.95 8 14 0.017 1.3 10.4 0.1 3 23 416 437 415 437 0.95 9 14 0.0013 0.1 13.9 0.1 3 23 449 470 447 470 0.95 10 14 2.3 1.8e+02 3.6 0.3 1 11 517 527 517 527 0.88 11 14 0.00038 0.03 15.6 3.5 1 23 543 565 543 565 0.97 12 14 0.00089 0.07 14.4 0.3 1 23 571 593 571 593 0.96 13 14 3.8e-05 0.003 18.7 0.3 2 23 598 619 598 619 0.97 14 14 0.0044 0.35 12.2 1.3 1 23 625 648 625 648 0.94
Sequence Information
- Coding Sequence
- ATGCTAGCTCTCTGCGGAGAGACTGTATCGACGGGCCGCGTGCGCAGCATGTACCAGCACTTTGTGACGTCACACCCCGACACCCCCTACTGGTCGGTGTACAGCCGGCCGCAGTGTAGGTATCTCTGCGAACTCTGCGGGAAGACATTCAAGGACCTCCGTTTCTTCCTCGACCACCGCAACACTCACTCCGGCGCGCGGCCTTACTCGTGCTCCATCTGTTCCCGCACGTACGCCACTAAACGACATCTCGGCTGGCATACCGCGAGACACGGGCCGCCACGCAGAGTCACGTGGGTGATCGTCGATTCAAATGCGATATTTGTAGCAAAGGATTCCTACACCAAGCTGCGCTTAACGAGCACATCAGAGGGGTACATAACCATATACGACGCGCACGGAAGTGTAGGGACAAACGCTCGGGTGGAGTTACGGTCCCGTCTCTCGTCAGAGCCCTATACGTCTGCCAAGCACCGCTGTGAGCGCTGCTACACGGTCTACAAGTGCGAGAAACTGCTACAGTTCCACATGAAGTGGCATGATGTGAGTACAGACTCGGAGCCCTATACGTCTGCCAAGCACCGCTGTGAGCGCTGCTATACGGTCTACAAGTGCGAGAAACTGCTGCAGTTCCACATGAAGTGGCATGATACACAAGCCGAGTTTGAATGCGACATCTGCCTAATGCGCTTCGAAACTAGGAAATCGGAGCGAGCGCACCGCGCTAAATGTCACCGCGGGAAGTATTCGTGCAGGCTGTGTCCTCTAGTCACTTACTACGGGCTGTGTCCTGTAGTCACTTACTACGGtTCTGTAATGAAAGCACATTTTGAGAAACACCAGGGGAAAACACATAAATGCCATTGCGGTGCCGTCTTCAAACACATATCGTCGTACCTAAGCCACGCGCGCACGTCACACGTCACAGCGCACGCGTGCGTCACATGCGCGCGTACCTTCGTGTCGCAACTCGGCCTACGAAATCACAGGCTCAGGGCGCACCAGACTCGTTCGTTGGAGGATGCTGAGGGCGGCGTGGCGTGCTCTCTGTGTGAGCTCACGTTCCCTAACCAACGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTGAGCCAGGCTGCCAACGACATCGGCGTGGCGTGCTCTCAGTGTGAGCTCACGTTCCCTAACCAACGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTGAGCCAGGCTGCCAACGACATCGGCGTGGCGTGCTCTCAGTGTGAGCTCACGTTCCCTAACCAACGAGTGCTCAACGTGCATGTACTCAGCACGCACAAACTGAGCCAGGCTGCCAACGACATAATCGCGTGTCGCTACTGCGGCCTAGCATTCGACACTCCTGCGCAAGTTAAGGCGCATAAGAGGGAGAAACATCCGCGGAAGAAGGATGCAAATGATATGATCACTTGTGAACTGtgcggcgcggggggcgcgggcaGGAGGTGGCGTTACCGTCACTACTGTCAGTGTCACCCGCACGTTGACTACCGGACTGTGAGCGACGCGCCGCTCCACATGTGCGACCAGTGCGGGAAACTCTTCACTTGTCACCCGCACGTTGACTACCGGACTGTGAGCGACGCGCCGCTCCACATGTGCGACCAGTGCGGGAAACTCTTCACTAACGTGACCTGCCTGAAAGATCACATGAACGTGCATTTAGGGCTTCGCCCCCACGCGTGTAGCACTTGCGGCGCCTCTTTCGCTTTGAAGGCAGCTTTGGCTCAGCACAGgCAACGTCACGGGGCGCCGCGAGTCTGCACGCTCTGTCAAAAAGAGTTCCGGAGTACCGCCAACTATGCTGTTCATATGAGGATACACTCAGGCGTTCGTCGTCACGTTTGCTCCATCTGTTCTAAATCGTTCCTCCACCGCGCCGCGCTGAGGGAACACGAGCGCGGCGTGCATCGCCGCGAGCGGAGGAATACCAAACAGACGGACAGACTCAAACTGTAG
- Protein Sequence
- MLALCGETVSTGRVRSMYQHFVTSHPDTPYWSVYSRPQCRYLCELCGKTFKDLRFFLDHRNTHSGARPYSCSICSRTYATKRHLGWHTARHGPPRRVTWVIVDSNAIFVAKDSYTKLRLTSTSEGYITIYDAHGSVGTNARVELRSRLSSEPYTSAKHRCERCYTVYKCEKLLQFHMKWHDVSTDSEPYTSAKHRCERCYTVYKCEKLLQFHMKWHDTQAEFECDICLMRFETRKSERAHRAKCHRGKYSCRLCPLVTYYGLCPVVTYYGSVMKAHFEKHQGKTHKCHCGAVFKHISSYLSHARTSHVTAHACVTCARTFVSQLGLRNHRLRAHQTRSLEDAEGGVACSLCELTFPNQRVLNVHVLSTHKLSQAANDIGVACSQCELTFPNQRVLNVHVLSTHKLSQAANDIGVACSQCELTFPNQRVLNVHVLSTHKLSQAANDIIACRYCGLAFDTPAQVKAHKREKHPRKKDANDMITCELCGAGGAGRRWRYRHYCQCHPHVDYRTVSDAPLHMCDQCGKLFTCHPHVDYRTVSDAPLHMCDQCGKLFTNVTCLKDHMNVHLGLRPHACSTCGASFALKAALAQHRQRHGAPRVCTLCQKEFRSTANYAVHMRIHSGVRRHVCSICSKSFLHRAALREHERGVHRRERRNTKQTDRLKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -