Ecen008527.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000434.1:70871-84160[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.091 7.2 8.1 8.8 1 21 91 111 91 114 0.96 2 17 0.014 1.1 10.6 9.9 1 23 121 143 121 143 0.98 3 17 1 81 4.7 2.9 1 23 147 169 147 169 0.96 4 17 0.00011 0.0085 17.3 6.3 2 23 175 197 174 197 0.97 5 17 0.00041 0.033 15.4 0.7 1 23 201 224 201 224 0.97 6 17 0.00041 0.033 15.4 0.7 1 23 254 277 254 277 0.97 7 17 0.00041 0.033 15.4 0.7 1 23 307 330 307 330 0.97 8 17 0.00041 0.033 15.4 0.7 1 23 360 383 360 383 0.97 9 17 0.00041 0.033 15.4 0.7 1 23 413 436 413 436 0.97 10 17 0.00041 0.033 15.4 0.7 1 23 466 489 466 489 0.97 11 17 0.00041 0.033 15.4 0.7 1 23 519 542 519 542 0.97 12 17 0.00041 0.033 15.4 0.7 1 23 572 595 572 595 0.97 13 17 0.18 14 7.1 0.1 2 20 613 631 612 633 0.91 14 17 7.4 5.8e+02 2.1 6.8 3 23 670 691 668 691 0.86 15 17 2.1 1.6e+02 3.8 0.3 1 23 701 722 701 726 0.84 16 17 0.033 2.6 9.5 0.7 1 23 728 750 728 750 0.96 17 17 1.3e-05 0.001 20.2 2.1 1 23 756 779 756 779 0.98
Sequence Information
- Coding Sequence
- ATGGACTTAGATGACGCTGATTATGTGCCAACTATTGATGATGACTTCCCACCTATGGATGATGATCAGTCATCAAGTGATGATGATTTTGGGGACAAAATCAAGGATGATAAGGACAAATCCGATTCAAAAGAGAAAAAGGTCAAATTCGCCAGACAAAAACAAGAACACCTTAACCCTGACTTCTGGAAAAAGATACAAATGTCAGACGAAGAGGCGCTATTCGAGTTTAAGAACCAGGAGCACAGCGAGAAGTACATCAAAGCGAACTACAAGTGCACTAACTGCTTTAAAGGATTCTCAAAGCATCATATGTTGGTGAGGCATCAGAAATGTAGACATGAATTGACCCTAGGTCCGTTCGAGTGTCGGTTCTGCCACACTCGGTTCCGGCGCAAGTGTCGTCTCACGCAACACATGCGGCAGCACTACGCGATCTACCACTGTCTGCGGTGCGACATGCGCTTCAGAGTCGAACATTCAGCAATCATACACGAACGTTACCACAGCGGACAGCTGACCAAGTGCAAGCATTGCGGCGAAGAGTTCAAACACAGATCCACGTATTACTCCCACATGCGGATGTCGCACCGCAGCAACCACGTGTGCAGCCTGTGCGGCGCGTCATTCTTCAGCGAGGGGGGCCTCACGCAGCATCGACGGATCAAACACTTCGATAAGGATACACCGGTGATGTACCTACTTGTCACACAAACTTGCATTCATTACTCCCACATGCGGGTGTCGCACCGCAGCAACCACGTGTGCAGCCTGTGCGGCGCGTCATTCTTCAGCGAGGGGGGCCTCACGCAGCATCGACGGATCAAACACTTCGATAAGGATACACCGGTGATGTACCTACTTGTCACACAAACTTGCATTCATTACTCCCACATGCGGATGTCGCACCGCAGCAACCACGTGTGCAGCCTGTGCGGCGCGTCATTCTTCAGCGAGGGGGGCCTCACGCAGCATCGACGGATCAAACACTTCGATAAGGATACACCGGTGATGTACCTACTTGTCACACAAACTTGCATTCATTACTCCCACATGCGGGTGTCGCACCGCAGCAACCACGTGTGCAGCCTGTGCGGCGCGTCATTCTTCAGCGAGGGGGGCCTCACGCAGCATCGACGGATCAAACACTTCGATAAGGATACACCGGTGATGTACCTACTTGTCACACAAACTTGCATTCATTACTCCCACATGCGGATGTCGCACCGCAGCAACCACGTGTGCAGCCTGTGCGGCGCGTCATTCTTCAGCGAGGGGGGCCTCACGCAGCATCGACGGATCAAACACTTCGATAAGGATACACCGGTGATGTACCTACTTGTCACACAAACTTGCATTCATTACTCCCACATGCGGGTGTCGCACCGCAGCAACCACGTGTGCAGCCTGTGCGGCGCGTCATTCTTCAGCGAAGGGGGCCTCACGCAGCATCGACGGATCAAACACTTCGATAAGGATACACCGGTGATGTACCTACTTGTCACACAAACTTGCATTCATTACTCCCACATGCGGGTGTCGCACCGCAGCAACCACGTGTGCAGCCTGTGCGGCGCGTCATTCTTCAGCGAGGGGGGCCTCACGCAGCATCGACGGATCAAACACTTCGATAAGGATACACCGGTGATGTACCTACTTGTCACACAAACTTGCATTCATTACTCCCACATGCGGGTGTCGCACCGCAGCAACCACGTGTGCAGCCTGTGCGGCGCGTCATTCTTCAGCGAAGGGGGCCTCACGCAGCATCGACGGATCAAACACTTCGATAAGGATACACCGggAACGTCATCTGAAAATGTGATAATGAAGATTTACTGCGAAAAGTGCGACATAAAGTTTGTATCGCAACAAGCATACGACGAGCATCTGGTGCATTCAAATCGACATGACGAGGTAATAACGGATACGGAGATAAAACGGAAGAACTTAAAAGGAAAGAAGCATCTTGCCACAGGACCCTACAAGAGAAAGAAGCCTACTACTTGTATACACTGCGGCAAACACTTCTCGTCCCAAACGGCGTGCATGAAGCACCATCTAGCAGAACACCCTCGCAAGACTTTCCAGGACCAGCGGCACATCTGCGAGATATGCGGGGCTTCGCTAGCGGCTGTGTCGATAACGAGTCACATGAACATGCACACACGGGAGCACGTGTTCCCGTGCGGGATCTGCGGGATGGAGTTTATATCCAAGCGGAGTCACGACAGGCATCAAGTTACGCATACAGGAGAGAAACCCTACCCCTGTCCGCTTTGCGAGAAGCGATTCACTCAGAAGAACAGCATGAAGCTGCATTACAGGACCTTCCACTTGAAAATGCCGTACCCACCGAGAAATAGAAAGAGCAAAACGGACGAGACACCCCTGAACGAAGCGTGTCGAGAAAGAGACGTCGAAAGTAACTTCTTCCCGATCGGTAGATGGCGCTAA
- Protein Sequence
- MDLDDADYVPTIDDDFPPMDDDQSSSDDDFGDKIKDDKDKSDSKEKKVKFARQKQEHLNPDFWKKIQMSDEEALFEFKNQEHSEKYIKANYKCTNCFKGFSKHHMLVRHQKCRHELTLGPFECRFCHTRFRRKCRLTQHMRQHYAIYHCLRCDMRFRVEHSAIIHERYHSGQLTKCKHCGEEFKHRSTYYSHMRMSHRSNHVCSLCGASFFSEGGLTQHRRIKHFDKDTPVMYLLVTQTCIHYSHMRVSHRSNHVCSLCGASFFSEGGLTQHRRIKHFDKDTPVMYLLVTQTCIHYSHMRMSHRSNHVCSLCGASFFSEGGLTQHRRIKHFDKDTPVMYLLVTQTCIHYSHMRVSHRSNHVCSLCGASFFSEGGLTQHRRIKHFDKDTPVMYLLVTQTCIHYSHMRMSHRSNHVCSLCGASFFSEGGLTQHRRIKHFDKDTPVMYLLVTQTCIHYSHMRVSHRSNHVCSLCGASFFSEGGLTQHRRIKHFDKDTPVMYLLVTQTCIHYSHMRVSHRSNHVCSLCGASFFSEGGLTQHRRIKHFDKDTPVMYLLVTQTCIHYSHMRVSHRSNHVCSLCGASFFSEGGLTQHRRIKHFDKDTPGTSSENVIMKIYCEKCDIKFVSQQAYDEHLVHSNRHDEVITDTEIKRKNLKGKKHLATGPYKRKKPTTCIHCGKHFSSQTACMKHHLAEHPRKTFQDQRHICEICGASLAAVSITSHMNMHTREHVFPCGICGMEFISKRSHDRHQVTHTGEKPYPCPLCEKRFTQKNSMKLHYRTFHLKMPYPPRNRKSKTDETPLNEACRERDVESNFFPIGRWR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -