Ecen000893.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- pol
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000032.1:6291-36056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.32 25 6.3 1.0 1 23 777 799 777 799 0.97 2 12 0.054 4.2 8.8 0.3 1 23 806 829 806 829 0.93 3 12 0.83 65 5.0 0.2 1 23 833 855 833 855 0.92 4 12 0.015 1.2 10.5 1.0 1 23 860 883 860 883 0.98 5 12 0.00048 0.038 15.2 1.0 2 23 888 910 887 910 0.96 6 12 0.00048 0.038 15.2 1.0 2 23 942 964 941 964 0.96 7 12 0.15 12 7.3 0.1 2 11 996 1005 995 1008 0.89 8 12 0.1 8 7.9 0.1 2 23 1086 1108 1085 1108 0.96 9 12 0.034 2.7 9.4 0.1 3 20 1125 1142 1124 1145 0.92 10 12 2.8e-05 0.0022 19.1 0.7 1 23 1151 1173 1151 1173 0.97 11 12 0.0004 0.031 15.5 2.4 1 23 1180 1202 1180 1202 0.97 12 12 0.0002 0.015 16.5 3.0 1 23 1208 1231 1208 1231 0.93
Sequence Information
- Coding Sequence
- ATGCGTTGCAGTGTTCCAAACTGCAGCAATGCGTCAAAGATAGCTAGCAGAGACGATGGAATTACTTATCATCTgttTCCCAAAGAGCCAACCCAAAAATCGGCATGGATAGAAGCTCTTGGTATACCCGACGGGGCTCCTAATGAGCAGAGTGTTATCTGCTCTGAGCACTTCAAGAATGAAGACCTTTACATGACTAAATCTGGTACGCGGAGGATTAAAAATGGAAGCGTGCCGGTGATTGTTACTGACTCATCAGAAGACCTAGATAAGCCAGCTGCATTACGAGTGTGCAGAATATGCTTGGCAATGGACACAAGGTTGCTTGACATCCGGGAGCAAAACCTGGAGCAGTTCTATCTACAGATCACAGGGATATTTGTAAATAACGATAGATTGCCTCAGCGCGTTTGTTGGGAGTGTGCTGCTAGATTACGAGCGGCCGCAGAGCTAAGAGAGAAAGCGACACGTGTTAATACACTACTACATGGTCTCACTACTCATTCATACCGCCTTCTACTTCGTCGATTAGTTCCACACATAGAACCCAGACCAGAGCAGTTTGGTTTTCGCAGCCAACATTCCACAACTCTCCAACTCACACGGATTCTACATCATCTCGCCAACCAACTGAACAGCAATAACTCCACTGTCGGGATCTTCCTGGATGTGGAAAAGGCTTTTGATCGAGTGTGGCACCCAGGTCTGATTCTCAAGCTGATTGCCTCCTCCACACCAGCAGCAATCATCGAGGTGGTTGCGTCCTTTCTCCGAGGACGTAGTTTCTACGTTGCAGTTGAAGAAACCCAATCACAGTCCCGAGAAATTACAGCGGGAGTACCCCAAGGGAGTTGCCTTTCTCCAGTACTGTACGCTCTCTACACAAATGATATCCCTACTCTGGAGGATCAACTGTTACCCGGAGAAGACGACGTAACACTAGCGCTCTATGCAGATGACAGTGCCTACTTCTCTTCCTCATCCAACCCAGTCTCAGCCGCTAGCAAGATGCAGCGATTACTAAATCTTCTACCAGCGTGGCTAGACAGATGGCGTATAGCAGTCAACGCGGGGAAAACGGCGGCTCTGCTCGTTTCACGACGACGCACTACTCTACCACCTCTGGAGCTACGAGGCCAAGCCATAAACTGGCAAACCTCAGTCCGATATCTTGGCGTAGATATAGATAGGTCGTTGACGATGAATGCACAGGTAGAGCGCGCACTAAGGCAAACACGTACCGCCCGAGCCATGCTACGTCCTGTCTTGACATCTAAACTGCCGCTTCGAACAAAGATTGGGGTCTACAAAACCTACATCCGCTCACGTCTTTCTTATGCAACGCCGGCATGGTATGCGCTGTGCTCTGAAACCAACCAGAAAAGGATTCAAGCCCAACAAAATATCGCTCTCAGAGTCTGCACAGGCGCTGGCCGATACGTGCGAAACACGGTCATCGCACGTGACCTGCAAATGCCCTCAATAAAGGAGTTTGTGGTAAAGCTGGCGCGTGGAATGTACGATCGAGCGGTCAACTCTCGCCACGTACATCTAAACGGACTCGCTCCCTTGCACACAAGGCCGCCGGATGCAAAATCTTCATGGCGACCACTCCCCCGGGAACTGCTGGAACCTCCTTTTGAAGCTCCTCCTCACGAAGAAGACCATCACAGCCAATCGGCAACTGAACAGCCTTTGAGTAGCCCGCTGGACTCTCAAAGCGAAATCACAAGACTCGGAACAAAGAACCGTCTTACATCGAAACTCGTCCATAAAATATACGAAAACGATGATTCGGATCTACACATAAAAGACAATGAAATCATCAAATCAGAAACAAATAACGCTTTCAACGGTGACGATAACGGTTTTGATAACGATAACGGTTTTGATATCGATAACGGTTTTAATACCGATAACGCTGATAACAGTTTTGAAATTAAAGTTCCTGTACCAGAAATAAAAGATGAAAATGAGATATTTGTGAATGAATTTGATGATTTTGAATCCGATGATGAGAAAACTTTGAGTACGCTATCAAATCAAGTATGCATCGGTGATTTGAAGAAAGAAAAGGTGAaagtgaagaagaaaagaaaagtGAAGAAACTTAAAGAGAAAGTGAAGAAAACGGAAACGATGAAGAAGAAAGATGGCGAAGAAGATCCTGAAAGTACTATGGATAAGTATAAAACATCAGACATAAAACGTCGTAAGCCAAACGACGGCTTGGACGAAACTCTGTTTACTATCACCACCCCAACTTACGAAGAACAAATTGCTGAGGTCGAAAAACGTCAGGAATCTTCGTTGTACAAAAACGCACTGTTCAAATGTACGACGTGCTACCGCGGGTTTCAGATTCGGGATCGATACGAGGCACATATTGTACGGCATAGTGAGAAATGCGGCATGTACGAATGCTTCATATGCAAGACTCGACTGAAAGCGGCCAGAGCGCTACGCAAGCATATCACGGCGCAGCATACTGAACAATTCAGCTGTAAAGGATGTCCTTTTGTCACTAGGAACagAGGCGTAGCTCGAGAGCACGAGAAATGGCACGCGGGGACCAAGTATCAATGCCCACACTGTGCTATGGAGTTTGACAAACTAACAACATACATGGGTCACATCAGGATAAAGCACGCTTCAGACTGGGTGTGTCCTCACTGTGGATACACATTCGTGAGTCGCAAGGGTGTGCTCGTACACAAGCGGAAGAAGCATAGACTCATTGACGACAATGTGAGTATAACCGTGCTTTACAACAAGCTAACAACGTACATGGGTCACATCAGGATAAAGCACGCTTCAGACTGGGTGTGTCCTCACTGTGGATACACATTCGTGAGTCGGAAGGGCGTGCTGGTACACAAGCGGAAAAAGCATAGACTCATTGACGACAATGTGAGTATAACCGTGCTTTACAACAAGCTAACAACATACATGGGTCACATCAGGATAAAGCACGCTTCGGACTGGGTGTGTCCTCACTGTGGATACACATTCACGCCACTAGAAGGTCCCACGTGCGCAGTGTGCGAGGTTCAATTCGCGAGTGAGGAGGCTCACGCCAGACATCTCAAGCTTTCCTCAAGACATATGACCGAGAGCGATCCGAATCGCCTGCGCAACGACTCTCAGAGCATGAACGCGGAGCGAGTGGGACGCGTGATGAGACGCATCGAGCGGCGGCCCCTCATACACGGGCGGGGGGACGGGGACTGTGACGTCAGCACGCGGCCGCACGTCACATGCGAACAGTGCGGCGTCGTGCTACGCGATTTGCGACTGTACGCGCAACACTTCCGGCGCGCGCACCCTGACAAGAATCGAACCAAGTACCCGGCCATGAAGACGCCGGCCATGTGCGAACTGTGCGGCCGAATATTCCAGAGCATGGCCCTCCTAAAAGACCACATGTGGGTCCACACCGGCGAGAAGCGCTTCAAATGCGCCGGCTGCCCCAAGAGCTTCACCCAGAAGAGCAACCTGGTGTTCCACGAGCGGGTGCACAGCGAGCCGCGGCCCTCCTTCCCCTGCCCCCTCTGCGGGAAACACTTCGCCTTCTACAACAACAGGAGGCGGCACATGTTTATACACACAGGGCTCAAGCCGTTCAAGTGCAACACATGCGGCAAGTGCTTCACGACGGCGGGCGAGCAGCGCGCTCACTTGGACCACGTGCACATGAAGAAACCTTGGCCCAAGCGCGCCAGGAAGGACTACGACAAGTGTCATACTGAGCCCTAG
- Protein Sequence
- MRCSVPNCSNASKIASRDDGITYHLFPKEPTQKSAWIEALGIPDGAPNEQSVICSEHFKNEDLYMTKSGTRRIKNGSVPVIVTDSSEDLDKPAALRVCRICLAMDTRLLDIREQNLEQFYLQITGIFVNNDRLPQRVCWECAARLRAAAELREKATRVNTLLHGLTTHSYRLLLRRLVPHIEPRPEQFGFRSQHSTTLQLTRILHHLANQLNSNNSTVGIFLDVEKAFDRVWHPGLILKLIASSTPAAIIEVVASFLRGRSFYVAVEETQSQSREITAGVPQGSCLSPVLYALYTNDIPTLEDQLLPGEDDVTLALYADDSAYFSSSSNPVSAASKMQRLLNLLPAWLDRWRIAVNAGKTAALLVSRRRTTLPPLELRGQAINWQTSVRYLGVDIDRSLTMNAQVERALRQTRTARAMLRPVLTSKLPLRTKIGVYKTYIRSRLSYATPAWYALCSETNQKRIQAQQNIALRVCTGAGRYVRNTVIARDLQMPSIKEFVVKLARGMYDRAVNSRHVHLNGLAPLHTRPPDAKSSWRPLPRELLEPPFEAPPHEEDHHSQSATEQPLSSPLDSQSEITRLGTKNRLTSKLVHKIYENDDSDLHIKDNEIIKSETNNAFNGDDNGFDNDNGFDIDNGFNTDNADNSFEIKVPVPEIKDENEIFVNEFDDFESDDEKTLSTLSNQVCIGDLKKEKVKVKKKRKVKKLKEKVKKTETMKKKDGEEDPESTMDKYKTSDIKRRKPNDGLDETLFTITTPTYEEQIAEVEKRQESSLYKNALFKCTTCYRGFQIRDRYEAHIVRHSEKCGMYECFICKTRLKAARALRKHITAQHTEQFSCKGCPFVTRNRGVAREHEKWHAGTKYQCPHCAMEFDKLTTYMGHIRIKHASDWVCPHCGYTFVSRKGVLVHKRKKHRLIDDNVSITVLYNKLTTYMGHIRIKHASDWVCPHCGYTFVSRKGVLVHKRKKHRLIDDNVSITVLYNKLTTYMGHIRIKHASDWVCPHCGYTFTPLEGPTCAVCEVQFASEEAHARHLKLSSRHMTESDPNRLRNDSQSMNAERVGRVMRRIERRPLIHGRGDGDCDVSTRPHVTCEQCGVVLRDLRLYAQHFRRAHPDKNRTKYPAMKTPAMCELCGRIFQSMALLKDHMWVHTGEKRFKCAGCPKSFTQKSNLVFHERVHSEPRPSFPCPLCGKHFAFYNNRRRHMFIHTGLKPFKCNTCGKCFTTAGEQRAHLDHVHMKKPWPKRARKDYDKCHTEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00697417;
- 90% Identity
- iTF_00697417;
- 80% Identity
- iTF_00697417;