Ecen011998.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000811.1:454306-456946[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.91 71 4.9 0.4 1 20 3 22 3 24 0.86 2 18 0.46 36 5.9 0.2 1 23 65 88 65 88 0.91 3 18 0.39 30 6.1 0.1 2 23 114 136 113 136 0.95 4 18 0.35 27 6.2 0.5 2 23 160 181 159 181 0.93 5 18 0.00034 0.027 15.7 0.0 1 23 185 208 185 208 0.97 6 18 0.21 17 6.9 2.4 1 23 212 235 212 235 0.97 7 18 9.4 7.4e+02 1.7 0.1 9 23 250 265 240 265 0.86 8 18 0.022 1.7 10.0 0.0 3 23 331 352 330 352 0.97 9 18 2.4 1.9e+02 3.6 0.2 2 23 376 398 375 398 0.93 10 18 0.0011 0.083 14.2 0.6 2 23 422 443 421 443 0.96 11 18 0.38 30 6.1 0.6 1 21 447 467 447 468 0.93 12 18 4.9 3.8e+02 2.6 0.3 3 23 511 532 509 532 0.84 13 18 0.65 51 5.4 0.1 2 23 558 580 557 580 0.95 14 18 0.0086 0.68 11.3 0.2 2 23 604 625 603 625 0.94 15 18 0.00027 0.021 16.0 0.0 1 23 629 652 629 652 0.97 16 18 0.022 1.7 10.0 0.2 1 23 656 679 656 679 0.97 17 18 0.086 6.7 8.1 5.7 1 22 718 739 718 741 0.88 18 18 0.0033 0.26 12.6 0.3 1 23 751 774 751 774 0.97
Sequence Information
- Coding Sequence
- ATGAACTTCGCTTGCGATAAATGTGGAACCACTTATTTGTCTGATCGTGCATTACGTGACCACCATCAACAAATGAAATGCTCCAAAACAGCATACCATCCTCGTAACGGAAAAATAATGAGATCGCGCGGTAATGCTGAAATTATCTTACAATGTTCCACCGTTTGCCcttttagaacttggaaaaacaACTTCAATTGTGTATTTTGCCGTATTCAAACAAGCGATCCTAATAGTCTAAGAATCCATGTAGCAGAACGTCACGCTAACTATGATGTACAAACTGCGTTTTATAAGAGGCTAGGAAAAGATTTTCTGAGTGTCGATGTTACTGACATACAATGCAAGCTATGCTTCGCTCCTCTATCAAATATTGACGCTCTAACGTACCACTTGAAACAAAATCACCAACAACCTATAAATTTAGATGCCCCGCTAGGTTTGCTGCCTTTTAAACTGGATGATGGATCCGCTTGGAAATGCACAATATGCCTAGATCAGTTCAAAGATTTCATTTCTTTGAAGAAGCACACAGCAGGACATTTTCAAAACTATGTATGTGATGTTTGCGGTGAAGGGTTTATCACAGAATCAGCAATGGTAGCGCACACAAAGATACCTCACGAGAATAAATACAACTGTAGTCGATGCCTGGCGACTTTCTCCACAGAAGAGGAAAAAAATATTCACCATAAGACACAGCACACTTTGCCACCGTATATGTGCATCTACTGCGAAGATAAACCTCGGTTCACTAACTGGGAATTACGGAAAAAACATCTTATGGAAATGCACAACTATAAAACCGGAGCTGATAAATACGAATGCCTTGTATggCGCGGTAAGAGAAAAGTTTTAGAGAAGGAAACAAAACCAAAAAAGAAACTATTCGAAAGACAAGTAAATCAGAACCCACAATGGAAAAACGCTGTTCTCGTACTAAAACATTCGACTGCTATACCATTTAAGACATGCTTTAATAGAATACTATGCTCTTACTGTCAAGAGGAGTTTGAACCAATGGCAGCTCTAAGGGAGCATATAAAGTCTGTTCATTCCAGTGCAGACTTCAACAGCGCATTTTACAAAGTGATAGACGGACTCAAAGTGGACATCTCCCAAATGCAATGTAAAATCTGTTCTTCAGACATTGCTGATATCGACACACTTATGACGCATTTGTCCAAAACCCACGACGTTCCAGTGAACTTTGATGTCTCTTTTGGAGTGCTTCCGTACCGCCAGAGCTCAACTGCACTCTGGATGTGCCTCTATTGCGACAAAACTTACATCAAATTCTCTCAAATTAACGAACACCTTCGTAGCCATGTCAAGATTTACACTTGCGATAAATGCTCTGCCACGTTCTTATCAATACACGGTCTAAAGCAGCATGAACgcagttttaaatgttacaaaaTGAATTATAAACCACGCTTCGGAAAAACGTTAAAGCATAGGAGAAATACCGAAATAATACTGCAGTGTTCCACAGCTTGCCCTTTCAGAACTTGGGGTCAGAACttcaattgtatattttgtCGGGTTCAGTCTAATGATCCGAACGGACTCAGGATGCATATGGCTACCCGACACGCGGACTTCGATATCGGGCAAGTATTCAATAGAAAACTTCGAAAGGAATTCTTGAAGGTCGACATTACAGACTTGCAATGCAAGCTCTGTTTCATTCGTATAGATTCCATCGATGATTTGATGGTTCATCTCAAGAACGATCATAAGCAACCAATCAGCACAGATGTCCAGCCCGGCGTTCTACCTTTCAAACTGAAAGACGGTTCCAACTGGCAATGCGCAATTTGCTCAATACAGTTCACAGACTTCATATCATTGAAAAAACACACAGCGGAACACTATCAGAACTACGTGTGTGACACTTGTGGCGAGGGTTTCATAACGGATACAGCTCTGATCGCCCACACGAGGATACCGCACGATAACAAGTACGCTTGTGGGAGATGCGTCGCCACATTCTCAACTTTAGAAGAGAGAAACGTTCACATCAAAACCCAGCATACAAACTTACCTTACATGTGCATCTACTGCAAAGAGAACCCTCGTTTTGCAACCTGGGAACTTCGCAAGCGGCATCTTATGGAAATTCACAACTACAAGCCTGGCGCAGATATGTACGAATGCACAACTTGCCACATGACGTTTAAGACTAGATCTCAGAAGTATCACCATAACGTGAAAGCTCATAGAACGAAGAAGGAAGCCGAGTATAGTTATCAATGCGGGAGTTGCGCGCGCGCGTTTGCATCTAAGATGTCGCTGGATAAACATATAGCTAAGAAGCATTTTCATCTTTAG
- Protein Sequence
- MNFACDKCGTTYLSDRALRDHHQQMKCSKTAYHPRNGKIMRSRGNAEIILQCSTVCPFRTWKNNFNCVFCRIQTSDPNSLRIHVAERHANYDVQTAFYKRLGKDFLSVDVTDIQCKLCFAPLSNIDALTYHLKQNHQQPINLDAPLGLLPFKLDDGSAWKCTICLDQFKDFISLKKHTAGHFQNYVCDVCGEGFITESAMVAHTKIPHENKYNCSRCLATFSTEEEKNIHHKTQHTLPPYMCIYCEDKPRFTNWELRKKHLMEMHNYKTGADKYECLVWRGKRKVLEKETKPKKKLFERQVNQNPQWKNAVLVLKHSTAIPFKTCFNRILCSYCQEEFEPMAALREHIKSVHSSADFNSAFYKVIDGLKVDISQMQCKICSSDIADIDTLMTHLSKTHDVPVNFDVSFGVLPYRQSSTALWMCLYCDKTYIKFSQINEHLRSHVKIYTCDKCSATFLSIHGLKQHERSFKCYKMNYKPRFGKTLKHRRNTEIILQCSTACPFRTWGQNFNCIFCRVQSNDPNGLRMHMATRHADFDIGQVFNRKLRKEFLKVDITDLQCKLCFIRIDSIDDLMVHLKNDHKQPISTDVQPGVLPFKLKDGSNWQCAICSIQFTDFISLKKHTAEHYQNYVCDTCGEGFITDTALIAHTRIPHDNKYACGRCVATFSTLEERNVHIKTQHTNLPYMCIYCKENPRFATWELRKRHLMEIHNYKPGADMYECTTCHMTFKTRSQKYHHNVKAHRTKKEAEYSYQCGSCARAFASKMSLDKHIAKKHFHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00699508;
- 90% Identity
- iTF_00699508;
- 80% Identity
- -