Ecen022684.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010001189.1:184944-192772[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00079 0.062 14.5 0.1 3 23 235 256 234 256 0.97 2 14 3.4e-06 0.00027 22.0 6.7 1 23 260 282 260 282 0.98 3 14 0.089 7 8.1 0.2 6 21 321 336 317 341 0.89 4 14 0.00015 0.011 16.9 0.5 1 23 349 372 349 372 0.93 5 14 9.5e-05 0.0075 17.4 1.2 2 23 378 400 377 400 0.97 6 14 0.1 8.1 7.9 0.1 2 12 411 421 410 425 0.85 7 14 7 5.5e+02 2.1 0.3 12 23 433 445 430 445 0.89 8 14 0.1 8.1 7.9 0.1 2 12 456 466 455 470 0.85 9 14 7 5.5e+02 2.1 0.3 12 23 478 490 475 490 0.89 10 14 0.1 8.1 7.9 0.1 2 12 501 511 500 515 0.85 11 14 0.1 8.1 7.9 0.1 2 12 546 556 545 560 0.85 12 14 7 5.5e+02 2.1 0.3 12 23 568 580 565 580 0.89 13 14 0.00019 0.015 16.5 2.4 2 20 591 609 590 612 0.92 14 14 2.8e-05 0.0022 19.1 0.7 3 23 620 641 618 641 0.96
Sequence Information
- Coding Sequence
- ATGTCTAGTACGGATATCAAGAAAATTTGTTGTGCTTGCCTGAACATAAATCGTGAACTGTTTCAGTTGTACAAGATGCCTGATGGCCTAAATATCTTATATTCTTTGCTACAATGTGATCCTGATGCTTTTAGGGAAGGATTTTTAAAGGATAGTAAATCCTGGATGGTTTGCTTGGAATGCCACgcttttatttcaaacattaagAAGTTCCGAGATCAAATAGTCTTTACTTTAAAACAGCTGCGGACTTTAACCATTGATAAATTTATGGAAATTACCACACTATCACAACAGAAAAAATATACTATTCCAACACTAAACACTGTAACAGCTGATGTGTTTATAGACTGTGGCCAATATAAAGAcattaagaaagaaaatatctTTGATGCTCAATGCGtggaaagtaacttattaacaTATCGAGATGATAAGAATAAAACTGAAGAAAACACCAGCATTAATGACAAAATTCTCTCTAAAGAACTACAGGAAATAACTGGTAGATCTGTTATAAAGAAATCTGAAGCAATTGATGACTTTGGTACAGATGAAATTGCACTTCCTGATGATTTTAACAATGGATGTGTTAGTGATGATTTTCAGGATaagaaagctaaaaaaaaactaaaaaagaatGGAGATTCTAAAGTCAAGAAAAAGataaaaattaaaagcagAAAACCCAACCAAATTCTTTGTACAGAGTGTGGAATGTCATTTGAGAATAAAGGTGCCAAATGGAAACATATTCAAATAGCTCATAAAGAGGGGCACAAGTGTAATACTTGTGGAAAAAAGTTCTCATTTAAATTCAACTTGCAAAGGCATCAGAGCACCCACgccgcccccgccccccgcgccccttGCCCCACCTGCAGTAAGCTAGTGTCCCTCCCCCGGCTCGCCTCGCACGCACGCACGCAcgcgcgccgcgcgcccgccgcgTGCGCGCCGTGCCGGCGCACGTTCGTGACTAGAGACACGTACGAGGCTCATCTGAGGAATAGTAAGGCTCATGCGGATGGAGATATATTCAGATACCCATGTCAGTTGTGCGACAAAAAGTATCGCTCCCGCGGGGAGCTGCGCGACCACGTCGCTTATAAACACGACAATCAGAAACAGAAGTGTCCCGTATGCGAGAAGTGCCTAGCTACCCGCAGGTCTCTCGCGCGGCACGTGCGGCGCGCGCACGAGGGCGTGAGGGAAGGGGCGCGCGACAAGATGTGTGATTACTGCGGACGGACCTTCCGGGTGAGAACTCTTATATTATTGTTCCAGTACCTAGCTACCCGCAGGTCTCTCGCGCGGCACGTGCGGCGCGCGCACGAGGGCGTGAGGGAAGGGGCGCGCGACAAGATGTGTGATTACTGCGGACGGACCTTCCGGGTGAGAACTCTTATATTATTGTTCCAGTACCTAGCTACCCGCAGGTCTCTCGCGCGGCACGTGCGGCGCGCGCACGAGGGCGTGAGGGAAGGGGCGCGCGACAAGATGTGTGATTACTGCGGACGGACCTTCCGGGTGAGAACTCTTATATTATTGTTCCAGTACCTAGCTACCCGCAGGTCTCTCGCGGGGCACGTGCGGCGCGCGCACGAGGGCGTGAGGGAAGGGGCGCGCGACAAGATGTGTGATTACTGCGGACGGACCTTCCGGGTGAGAACTCTTATATTATTGTTCCAGTACCTAGCTACCCGCAGATCTCTCGCGCGGCACGTGCGGCGCGCGCACGAGGGCATGAGGGAAGGGGCGCGCGACAAGATGTGTGATTACTGCGGACGGACCTTCCGGGACAGGAAATCCCTGTGTGAACACATTTGGCGACACACGGGCGCGCGGCCGCTCGCCTGTGCTCACTGCCCGCGCTCGTTCCGGCAGCGCGCGGCCTTGTACGAACATATGAAGAGATTGCATCCCAATCCGAACGgataa
- Protein Sequence
- MSSTDIKKICCACLNINRELFQLYKMPDGLNILYSLLQCDPDAFREGFLKDSKSWMVCLECHAFISNIKKFRDQIVFTLKQLRTLTIDKFMEITTLSQQKKYTIPTLNTVTADVFIDCGQYKDIKKENIFDAQCVESNLLTYRDDKNKTEENTSINDKILSKELQEITGRSVIKKSEAIDDFGTDEIALPDDFNNGCVSDDFQDKKAKKKLKKNGDSKVKKKIKIKSRKPNQILCTECGMSFENKGAKWKHIQIAHKEGHKCNTCGKKFSFKFNLQRHQSTHAAPAPRAPCPTCSKLVSLPRLASHARTHARRAPAACAPCRRTFVTRDTYEAHLRNSKAHADGDIFRYPCQLCDKKYRSRGELRDHVAYKHDNQKQKCPVCEKCLATRRSLARHVRRAHEGVREGARDKMCDYCGRTFRVRTLILLFQYLATRRSLARHVRRAHEGVREGARDKMCDYCGRTFRVRTLILLFQYLATRRSLARHVRRAHEGVREGARDKMCDYCGRTFRVRTLILLFQYLATRRSLAGHVRRAHEGVREGARDKMCDYCGRTFRVRTLILLFQYLATRRSLARHVRRAHEGMREGARDKMCDYCGRTFRDRKSLCEHIWRHTGARPLACAHCPRSFRQRAALYEHMKRLHPNPNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -