Ecen012002.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000811.1:473067-476950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.033 2.6 9.4 0.0 2 23 2 24 1 24 0.88 2 15 0.12 9.3 7.7 0.4 2 23 51 73 50 73 0.95 3 15 0.17 13 7.2 0.5 5 23 118 137 115 137 0.90 4 15 0.29 23 6.5 0.0 2 23 162 184 161 184 0.95 5 15 0.081 6.4 8.2 0.0 1 23 206 228 206 228 0.95 6 15 0.013 1 10.7 0.0 2 17 233 248 232 249 0.91 7 15 4.7 3.7e+02 2.7 0.0 8 23 249 265 248 265 0.90 8 15 0.32 25 6.3 0.1 2 23 290 312 289 312 0.94 9 15 1.7 1.3e+02 4.1 0.4 2 23 335 356 334 356 0.93 10 15 0.0038 0.3 12.4 0.1 1 21 360 380 360 381 0.94 11 15 0.0024 0.19 13.0 1.1 1 23 414 437 414 437 0.95 12 15 0.0027 0.21 12.9 0.7 1 23 444 467 444 467 0.93 13 15 0.053 4.2 8.8 0.2 2 23 473 494 472 494 0.95 14 15 1.1e-05 0.0009 20.3 0.7 1 20 500 519 500 522 0.96 15 15 0.0019 0.15 13.4 3.9 1 23 528 551 528 551 0.96
Sequence Information
- Coding Sequence
- ATGGTTTGCGTGTTTTGTGGCGAAAGCTACGACGACCCCGCTTTGTTCAGGGCGCATAGTGAACAAGAGCACCAAGAACTTAAACCCGAAATAGCTTTGTTCCATATAAAAGATATGTCTTGTGATCTCAAAGTCGATTGCACCGATCTTCGATGCAGGCTTTGCTTTACTCGTTTCGAAAATATAGATGATGTCGCTAAACATCTTAGTAAAGGCCATGACATATCAATAAACTTGGAAGGCGACTTAGgtTTAAATCCGCTGACCATCGCTAAAACAAACGGACGCACGATCATTCAGAATTCGACTGCATACCCATTTAGACTGCCAGAAAGTTCTATTATGTGCATATTCTGCTCCGAGTGTTTCCCCGAAGCAGCTCTGTTCAGACGGCACATGGCACAAGAACACGAGATCTTTGATATAAGGCTCGCATATGCTCATATCACTGCTGGACAACTGAAAGTAGACATCACGGAACTCACTTGTCGAATATGCTCCTCGCCCTTCAATAGCCTTGAAGATATAGCTGATCATCTTATTACTGAGCATTCTAAAAACATATATCTTGACTACGGTCTAGGATTGCAAccatattatttggaaaatgaaCAGTTTATATGTGCCATATGCGAAGAGAAAACCCCTTCCCTTGTCGCATTAAGCAGGCATACTGcgaatcattacaaaaattgtATTTGCGAGCATTGCGGGAAGGCATATGCTTCAAATGGGTCTCTGAGGGAGTCTTTCCCTAACGCACCCCAATTCAGGCTTCACATGTCCCAAGAACACGAGACTTATCGTATACAAATGGCTTTCCAACACGTCTCAGACGGACAAATGAAAGTTGACATCACGGAGTTAAAGTGTCGATTATGTTCGTTACCGTTCAATAGCCTCCAACAAATAGCAGATCACTTGATCAAGGTTCATTCTAAAACGATAGATCTTGACAACGATTTAGGCTTGCAGCCATATTTCATAGAAGATGAAAAGTTGTCTTGCGCGGTGTGTCAACACAAAAGCCCTAATATGGTCGCGTTAAGCAGGCACACTGGATcgcattttaaaagttttatctgCGAACATTGCGGGAATGCTTACGCTACTAACGGTTCTCTGATGTATCATGTCAAAAATTCCTGTTCTAAAGACGGACAAATTCGATGCAGGAAATGTAGAAAGATCGTTTCTTCAATGCTGGAGCATTTTAAAGAATCCGAGTTGTGCAGACAGCACATCTGTAGTATATGCGGAGATAGGTTCTCAACGTGGCACGCCAAACGAGTCCACATGGAGTCTGCTCACTCCACGCCGAAAAAGACTTTCCGCTGTCCTGAATGTAACGATGATTTTAAATCTAGTGCACTTTTAAGACAGCATTTCAATTTTgttcacacaaaaaaatatcttgagTGCATGCAATGTGGATTGAAATTTATGACCCGAAATCGCCTAGATCTGCACATGGTTGTGCATACTGGTGAAAAGATATTCGTATGCGATGTCTGTAATAAGAGTTATTACAGGAAATCCACTTTGAACCAACATATGTGGGCTCACAGCGAAATTAAGAGGCATAATTGTAAGATATGCGCTAAGTCATTTAACCAAGGAGTGTGCTTGAGGGTTCATATGAAATCACAACATCCAAACGTGGATCTCAGTACAGACTCTTAA
- Protein Sequence
- MVCVFCGESYDDPALFRAHSEQEHQELKPEIALFHIKDMSCDLKVDCTDLRCRLCFTRFENIDDVAKHLSKGHDISINLEGDLGLNPLTIAKTNGRTIIQNSTAYPFRLPESSIMCIFCSECFPEAALFRRHMAQEHEIFDIRLAYAHITAGQLKVDITELTCRICSSPFNSLEDIADHLITEHSKNIYLDYGLGLQPYYLENEQFICAICEEKTPSLVALSRHTANHYKNCICEHCGKAYASNGSLRESFPNAPQFRLHMSQEHETYRIQMAFQHVSDGQMKVDITELKCRLCSLPFNSLQQIADHLIKVHSKTIDLDNDLGLQPYFIEDEKLSCAVCQHKSPNMVALSRHTGSHFKSFICEHCGNAYATNGSLMYHVKNSCSKDGQIRCRKCRKIVSSMLEHFKESELCRQHICSICGDRFSTWHAKRVHMESAHSTPKKTFRCPECNDDFKSSALLRQHFNFVHTKKYLECMQCGLKFMTRNRLDLHMVVHTGEKIFVCDVCNKSYYRKSTLNQHMWAHSEIKRHNCKICAKSFNQGVCLRVHMKSQHPNVDLSTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -