Ecen014131.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000881.1:604984-613924[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00029 0.023 15.9 2.5 1 23 260 282 260 282 0.98 2 11 3.8 3e+02 3.0 0.1 1 23 289 311 289 311 0.93 3 11 2.4e-05 0.0019 19.3 0.6 1 23 342 365 342 365 0.98 4 11 0.61 48 5.5 0.0 3 23 374 395 373 395 0.95 5 11 0.028 2.2 9.7 0.4 2 20 406 424 404 426 0.93 6 11 0.017 1.4 10.3 0.3 3 23 439 459 439 459 0.98 7 11 0.016 1.3 10.4 0.3 2 23 466 488 465 488 0.92 8 11 0.00021 0.017 16.3 4.8 2 23 499 520 498 520 0.96 9 11 1.4e-05 0.0011 20.1 3.9 1 23 526 548 526 548 0.98 10 11 0.00025 0.019 16.1 0.6 1 23 554 576 554 576 0.94 11 11 3.9e-05 0.0031 18.7 0.3 1 22 582 603 582 605 0.90
Sequence Information
- Coding Sequence
- ATGAAGCCTTCATTAACTTGCAGAATATGCCTCAATACAGGAGTAAAACTTTACGATATGGACAAATACAGACTGAAATCCACTTACGATGATTTGTGCGGAAGCAAGGTGGAACTCAGTATTACCCCGCAGTTTACCTGTGTTTACTGCTCCGCGTTATTAAAGAAGTTTGCTTCGTTTAAATTGAAGTGCGAAGAGGCCAGACAGCTGCTGGAGTTTCTAGCCAGTGAAGATGATCAGgtCCACTCAGTTTCTAATATAGACACAATAAAATCAAACGTAGCCCATCCCTACAAATTACATGAAATCCACAATTTCGATAACTTCACAGAAATAAAGGATGAATATACTGATTTATATGAGAATGAAACAAATGTTTTGGACAGCAAAGAGTTTTTCACTGATTTTAATTATAAGTGTGACAGTGATGATGAACCATtagtgaaaaaaatcaaaagcaTAAAAAATTATGCAATATATCATGTAAAAACTGAAATTGATTCTGATGAAATGCCAACAGAGGATTTCGAAGACCAAAGTAACATAGAAAACTTTGATGAAAGTAACAAAGATGGTAACATAGAATGTAACAAAGATAGTAACTCAATAGAGATTAATATAGATAGTAACATAAAGAGTAACAAAGTTAGTAACTTAGAAGATAGCAAAAAAGTAGTAATTGCAAATTGGGAGTTTGATTTAGTAACATTAACAAAAGAGCAGCAAATTGAAGAGGTTTTATCAAGGAAGGAAACGTCAAATTATGTAAACTCAAGATACAAATGCAATTATTGTTACAAAGGATTCATGACAGAGACTACTTATAAAAATCACATGATTTTACATGATGAGTCAATGGGCCCGCACACCTGCGCTATCTGTCAGTCCCGCTgggcgagcgcgcgcgcgctgACAGCGCACGCGGGCACACACTCGCGCCGGTTCGTGTGCCGCGTCTGCGAGCACGTCGACAAATCACAACAGAGGGCTAAAGAGCATGCGCAGTGGCATAGCGGTCACAAATACACATGCCAAGAGTGCGGCGCGTCGTTCCAACGTAGCACGACGCTGCTCACTCACGTGAGAGTGAGACACACGCGCGGCGACGCGGCGGCGCCGTGCGACGCGTGTGGCGCCGTCTTTATAGGGGAGGTCGGGCTTAGTATACACAAGAAGAAAGCACATAGAAACCTAGAGTCTAAAGCAGAGTGCTCCGAGTGCGGGAGCTGTGGAGCCAAATTCAAGAACGATGCCGCTTTGAATAGACATCGAGAATTGGCAACCAGCGACATCTGTGATACTAAACTTAATTGGTGCGAGTTTTGTGGCGAAAGTTGTATTTCTGAAGAGCAATACATAGAACATGTAAAGATACACCAGTCACGGCCGACGCTGTCCTGCGATGAGTGTTCGTCCACGTTTAGGTCGGAGCGGTCGCTCTCAGCGCACTTCGCCCGCGCGCACGGCGGCGCGGACAAActgcgcgcgcgctgcgtctgCGAGCTGTGCGGACACACTTGCAATTCTCGCTCGCTGCTTGCAGCTCACCAACGCACGCATTCGGGCGAGCGGCCTTATCACTGCGAGCTCTGTAGCAAGCGATTCAACAAGCAACAACTTTTACAGATTCACATGCGAACTCACACAGGGGAGCGTCCCTTCCAATGCGCCGCCTGCCCGAAGGCGTTCAAACACAAGGCTGCGCTCAATAGACACGACCGGGTACATACAGGAGTGCGGCCATACCGCTGTGCCACATGCGGTAAGACATTCTCTCAATCAAACTCGATGAAGCAACACGCGGCCGCCGTGCACATGAAGACACCGCTGTATGCGAGGAAAAACAAACAGGGGACTTACTTTTAA
- Protein Sequence
- MKPSLTCRICLNTGVKLYDMDKYRLKSTYDDLCGSKVELSITPQFTCVYCSALLKKFASFKLKCEEARQLLEFLASEDDQVHSVSNIDTIKSNVAHPYKLHEIHNFDNFTEIKDEYTDLYENETNVLDSKEFFTDFNYKCDSDDEPLVKKIKSIKNYAIYHVKTEIDSDEMPTEDFEDQSNIENFDESNKDGNIECNKDSNSIEINIDSNIKSNKVSNLEDSKKVVIANWEFDLVTLTKEQQIEEVLSRKETSNYVNSRYKCNYCYKGFMTETTYKNHMILHDESMGPHTCAICQSRWASARALTAHAGTHSRRFVCRVCEHVDKSQQRAKEHAQWHSGHKYTCQECGASFQRSTTLLTHVRVRHTRGDAAAPCDACGAVFIGEVGLSIHKKKAHRNLESKAECSECGSCGAKFKNDAALNRHRELATSDICDTKLNWCEFCGESCISEEQYIEHVKIHQSRPTLSCDECSSTFRSERSLSAHFARAHGGADKLRARCVCELCGHTCNSRSLLAAHQRTHSGERPYHCELCSKRFNKQQLLQIHMRTHTGERPFQCAACPKAFKHKAALNRHDRVHTGVRPYRCATCGKTFSQSNSMKQHAAAVHMKTPLYARKNKQGTYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698571;
- 90% Identity
- -
- 80% Identity
- -